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The map label for this gene is citE [H]

Identifier: 15898098

GI number: 15898098

Start: 1079407

End: 1080216

Strand: Reverse

Name: citE [H]

Synonym: SSO1254

Alternate gene names: 15898098

Gene position: 1080216-1079407 (Counterclockwise)

Preceding gene: 15898099

Following gene: 15898096

Centisome position: 36.1

GC content: 40.37

Gene sequence:

>810_bases
ATGATAAGGAGATCTCAGTTATACGTCCCTGCAACTTCCGAAAAGATGATAAGGAAATCGGTTGAACTAAAGGCTGATTC
AATAATTTTCGATCTTGAAGATGCAGTACCTCCTGAGGATAAAGAGAGAGCAAGGGAATCGCTAATTAAACTCGTGAAGG
AACTGGATTGGGGGAAGAGGGAGTTATGCGTAAGAGTGAATTCCCTACAATTGCTTGACTCATATAAGGACATTTCTACA
ATCGCAAGGGAGGATAAAATCACGTGTATTGTCTTACCAAAGGCTGAGAACGACCTTTCATTTCTCTACAAGGCAACTGG
GAAATCCTTAATACCATTGATAGAAACTGCAAAGGGTTTAGTTAAGATTGAGGATATAGTTAGGTCGGAAGGCGTTGTTG
CCGTAAGTTATGGAGCAGCCGATCTTTCATTGTCCCTTGGCGGGGACTACAATTTTTATGAGAAGAACGTGTACGTAAAG
ACTTTAATTGTCAGCGTCGCTAGGACTTATGACGTTGACGCTATAGATAAGGTTTATTTCGATTTGAAAAACCTAGATGG
TTTTAGGAAGGAATGCGAAGAAGCAAAGAAGCTGGGTTATGTGGGTAAGCAAGTTATTCATCCCTCTCAGATTGATATTT
CAAATGAGGTGTTCTCACCGAGTAAGGAGGAAATTGAGTGGGCTAAAAAGGTTATAGAGGCTTATGAAAAGGGGAAGAGG
GAGGGTAGAGGAGCTATAAGGTTAGACGATAAGTTAGTTGATTACGTGCATTATAAGATAGCTAAGAGGATAATTGAGTT
TCAGAGTTAG

Upstream 100 bases:

>100_bases
GATGCGAATGCATGAGGAGAAAGTTTTAGATTATGTAAAGCAAAATATACTGCCAGTAATGTTTAGATAAGATTTTATGC
TCAACCTCCATTATTAACTT

Downstream 100 bases:

>100_bases
TTTCCCTATAGACTACCCACGTTCCCAAAGCCTTTGCACATAGATTACTGTTACCGTCATATGCTGATATATCAACTACA
ACCAATCTTTTTCCCTCACT

Product: Citryl-CoA lyase beta subunit homolog (citE)

Products: acetate; oxaloacetate

Alternate protein names: (3S)-malyl-CoA thioesterase [H]

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKRELCVRVNSLQLLDSYKDIST
IAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGLVKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVK
TLIVSVARTYDVDAIDKVYFDLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKR
EGRGAIRLDDKLVDYVHYKIAKRIIEFQS

Sequences:

>Translated_269_residues
MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKRELCVRVNSLQLLDSYKDIST
IAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGLVKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVK
TLIVSVARTYDVDAIDKVYFDLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKR
EGRGAIRLDDKLVDYVHYKIAKRIIEFQS
>Mature_269_residues
MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKRELCVRVNSLQLLDSYKDIST
IAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGLVKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVK
TLIVSVARTYDVDAIDKVYFDLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKR
EGRGAIRLDDKLVDYVHYKIAKRIIEFQS

Specific function: Catalyzes the hydrolysis of (3S)-malyl-CoA to (3S)- malate and free CoA. Inactive towards beta-methylmalyl-CoA and other CoA esters [H]

COG id: COG2301

COG function: function code G; Citrate lyase beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family [H]

Homologues:

Organism=Homo sapiens, GI45545437, Length=291, Percent_Identity=31.6151202749141, Blast_Score=152, Evalue=4e-37,
Organism=Escherichia coli, GI87081764, Length=268, Percent_Identity=30.5970149253731, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17557458, Length=281, Percent_Identity=30.6049822064057, Blast_Score=134, Evalue=5e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR011206
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: 4.1.3.6

Molecular weight: Translated: 30621; Mature: 30621

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKR
CCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCH
ELCVRVNSLQLLDSYKDISTIAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGL
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHH
VKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVKTLIVSVARTYDVDAIDKVYF
HHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
DLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKR
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
EGRGAIRLDDKLVDYVHYKIAKRIIEFQS
CCCCCEEEHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRRSQLYVPATSEKMIRKSVELKADSIIFDLEDAVPPEDKERARESLIKLVKELDWGKR
CCCCCEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCH
ELCVRVNSLQLLDSYKDISTIAREDKITCIVLPKAENDLSFLYKATGKSLIPLIETAKGL
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHH
VKIEDIVRSEGVVAVSYGAADLSLSLGGDYNFYEKNVYVKTLIVSVARTYDVDAIDKVYF
HHHHHHHHCCCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
DLKNLDGFRKECEEAKKLGYVGKQVIHPSQIDISNEVFSPSKEEIEWAKKVIEAYEKGKR
HHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHH
EGRGAIRLDDKLVDYVHYKIAKRIIEFQS
CCCCCEEEHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.345 {acetyl-CoA}} 0.0718 {acetyl-CoA}} 0.0367 {oxaloacetate}} 0.0565 {oxaoacetate}} [C]

Substrates: citrate

Specific reaction: citrate = acetate + oxaloacetate

General reaction: elimination (of an oxo-acid C-C bond cleavage [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA