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The map label for this gene is 15897521

Identifier: 15897521

GI number: 15897521

Start: 529769

End: 530119

Strand: Reverse

Name: 15897521

Synonym: SSO0605

Alternate gene names: NA

Gene position: 530119-529769 (Counterclockwise)

Preceding gene: 15897522

Following gene: 15897520

Centisome position: 17.72

GC content: 35.04

Gene sequence:

>351_bases
ATGCAAAAGTTTTTATACTATTCCCTCACTTTATTTACACTTATGAAGTTTTGTCCTAAGTGCGGAGGATTAATGGTTCC
ATCAAAGAAAGACGGGAAAGAAATCTTGAAATGTAGTAAATGTGGCTATGAGATGATGTTAAGTGAAAAAGAGAAGAAAG
AATATAGTGTAAAGGAGAGCAAGGATAAGAGTAGTAAAGTGTTAACAACATCAATAGTTAGTGACAAAGAGGGAAGAAAT
TTAAGCGAGGAGCTAGAGCATGAAAGGGAAGAGTATTATAAGGAAATAGGGTTGGAGTTACTAAGAGAGGAATTCGAGGG
AAATGAAGAGGAAGAAAGTAGAGAAGATTAG

Upstream 100 bases:

>100_bases
GCTTCTTAAAACAGTTGCTTAAAAATCCTAAGATTGAAAGAACATATACAAGTATAGTTTTAAATGTTGTCAAAGAAGAT
CCAAGAATACGAATATTTTA

Downstream 100 bases:

>100_bases
AGCATTCTAGTAGTGATTTGTAAACTTGTTGAATTTTTGCGGTCATTTAAGAATCTTCGCAAAGCTAAGCTGTAGGCCTT
TACATTAATTAAGATGAAGA

Product: zinc finger protein

Products: NA

Alternate protein names: DNA-Directed RNA Polymerase M/15 KDa Subunit

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MQKFLYYSLTLFTLMKFCPKCGGLMVPSKKDGKEILKCSKCGYEMMLSEKEKKEYSVKESKDKSSKVLTTSIVSDKEGRN
LSEELEHEREEYYKEIGLELLREEFEGNEEEESRED

Sequences:

>Translated_116_residues
MQKFLYYSLTLFTLMKFCPKCGGLMVPSKKDGKEILKCSKCGYEMMLSEKEKKEYSVKESKDKSSKVLTTSIVSDKEGRN
LSEELEHEREEYYKEIGLELLREEFEGNEEEESRED
>Mature_116_residues
MQKFLYYSLTLFTLMKFCPKCGGLMVPSKKDGKEILKCSKCGYEMMLSEKEKKEYSVKESKDKSSKVLTTSIVSDKEGRN
LSEELEHEREEYYKEIGLELLREEFEGNEEEESRED

Specific function: Unknown

COG id: COG1594

COG function: function code K; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13632; Mature: 13632

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKFLYYSLTLFTLMKFCPKCGGLMVPSKKDGKEILKCSKCGYEMMLSEKEKKEYSVKES
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KDKSSKVLTTSIVSDKEGRNLSEELEHEREEYYKEIGLELLREEFEGNEEEESRED
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQKFLYYSLTLFTLMKFCPKCGGLMVPSKKDGKEILKCSKCGYEMMLSEKEKKEYSVKES
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KDKSSKVLTTSIVSDKEGRNLSEELEHEREEYYKEIGLELLREEFEGNEEEESRED
CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA