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The map label for this gene is ybaO [C]

Identifier: 15897522

GI number: 15897522

Start: 530119

End: 530592

Strand: Reverse

Name: ybaO [C]

Synonym: SSO0606

Alternate gene names: 15897522

Gene position: 530592-530119 (Counterclockwise)

Preceding gene: 15897523

Following gene: 15897521

Centisome position: 17.73

GC content: 34.39

Gene sequence:

>474_bases
ATGTCAGATAGTAAAAAACGTACGGTAGATTTGGACGCAATAGATAGAAGATTATTAATAGAACTCACTAGAGATGCGAG
AACAAGTCTAAGAAGACTTGCAGAAGAGATGAACGTATCTCCAGCTACGCTTCATAACAGAATGACTAGAATGGTACAAG
AAGGAATGATAAAAAGCTTCGTAGCTTTGCTAGATTACTCTAAATTGGGTTTCGCTCTAACTGGCATAATTATGGCGAAA
GTGGATGGAAAACATCTTGTTGAATTCGAAAAAGAGATAGCAAACGCTGATAACGTTACAGCTGTTTATGATGTGGTAGG
GGAATATGATGTTGTAATAATCGCTAAGTTTAGAAGTGTAGAAGAACTGGATAGCTTCTTAAAACAGTTGCTTAAAAATC
CTAAGATTGAAAGAACATATACAAGTATAGTTTTAAATGTTGTCAAAGAAGATCCAAGAATACGAATATTTTAA

Upstream 100 bases:

>100_bases
TGTTCAGCTTATAATAGATGGTATATCACAAATAAAGTTGATATGAAGAACTCTGTTTAAGATGAAAATTTTTTAACATG
ATCTCTATAAGTTTATTAGT

Downstream 100 bases:

>100_bases
TGCAAAAGTTTTTATACTATTCCCTCACTTTATTTACACTTATGAAGTTTTGTCCTAAGTGCGGAGGATTAATGGTTCCA
TCAAAGAAAGACGGGAAAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MSDSKKRTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLGFALTGIIMAK
VDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQLLKNPKIERTYTSIVLNVVKEDPRIRIF

Sequences:

>Translated_157_residues
MSDSKKRTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLGFALTGIIMAK
VDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQLLKNPKIERTYTSIVLNVVKEDPRIRIF
>Mature_156_residues
SDSKKRTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSKLGFALTGIIMAKV
DGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLKQLLKNPKIERTYTSIVLNVVKEDPRIRIF

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=143, Percent_Identity=28.6713286713287, Blast_Score=67, Evalue=4e-13,
Organism=Escherichia coli, GI1787116, Length=161, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17975; Mature: 17844

Theoretical pI: Translated: 8.86; Mature: 8.86

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSKKRTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSF
CCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VALLDYSKLGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEHHCCH
EELDSFLKQLLKNPKIERTYTSIVLNVVKEDPRIRIF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC
>Mature Secondary Structure 
SDSKKRTVDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSF
CCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
VALLDYSKLGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEHHCCH
EELDSFLKQLLKNPKIERTYTSIVLNVVKEDPRIRIF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]