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The map label for this gene is rpoP

Identifier: 15897375

GI number: 15897375

Start: 385258

End: 385404

Strand: Reverse

Name: rpoP

Synonym: SSO5865

Alternate gene names: 15897375

Gene position: 385404-385258 (Counterclockwise)

Preceding gene: 15897377

Following gene: 15897373

Centisome position: 12.88

GC content: 34.01

Gene sequence:

>147_bases
ATGGCAGTCTATAGATGTGGTAAATGCTGGAAGACGTTTACAGATGAACAATTAAAAGTATTGCCAGGTGTAAGATGTCC
ATACTGCGGTTACAAAATAATATTTATGGTTAGAAAGCCTACTATAAAAATAGTTAAAGCGATCTAG

Upstream 100 bases:

>100_bases
GCCATTCTCAGAAATTATCTTTATATACACTCCCCTTTTAATCTTTCTATCCTTTTTTATCAGATAAGCTTATAAACGTT
ATCGTAAAGTAAATGTTGCT

Downstream 100 bases:

>100_bases
CTTTATAAACTGTAGCTGCTGTCTCCAGAATTATTCTGGAAGCCAATACACTAGTTATTCCTGAGGTGTCATAAGAAGGA
GAAACTTCCACAATATCAAA

Product: DNA-directed RNA polymerase subunit P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 48; Mature: 47

Protein sequence:

>48_residues
MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI

Sequences:

>Translated_48_residues
MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI
>Mature_47_residues
AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG1996

COG function: function code K; DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the archaeal rpoP/eukaryotic RPC10 RNA polymerase subunit family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOP_SULIA (C3N6M6)

Other databases:

- EMBL:   CP001401
- RefSeq:   YP_002843696.1
- ProteinModelPortal:   C3N6M6
- SMR:   C3N6M6
- GeneID:   7812440
- GenomeReviews:   CP001401_GR
- KEGG:   sim:M1627_1776
- ProtClustDB:   PRK00398
- HAMAP:   MF_00615
- InterPro:   IPR006591
- SMART:   SM00659

Pfam domain/function: PF03604 DNA_RNApol_7kD

EC number: =2.7.7.6

Molecular weight: Translated: 5597; Mature: 5466

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
12.5 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI
CCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCEEEEECC
>Mature Secondary Structure 
AVYRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKPTIKIVKAI
CCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEEECCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA