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The map label for this gene is ompR [H]

Identifier: 15892516

GI number: 15892516

Start: 580295

End: 580975

Strand: Reverse

Name: ompR [H]

Synonym: RC0593

Alternate gene names: 15892516

Gene position: 580975-580295 (Counterclockwise)

Preceding gene: 15892521

Following gene: 15892515

Centisome position: 45.79

GC content: 30.1

Gene sequence:

>681_bases
ATGCATACATACAAAGCACATATTTTAATCGTTGATGATGATAGCAGAATATTAGCACTTTTAAAGCAATTTTTAAATAA
AAACGCGTTTTTAGTATCAACGGCAAGCTCAGTCATAGAAGCTAAAAATCTATTAAAAACTTCTAATTATGATTTAATTA
TTTTAGATGTTATGTTACCTGAAATAACAGGGCTTGATTTTGCTACTACTATAAGGGATGCCGGTAATAATATTCCTATA
GTTATGCTTACTGCTTTATCGGAAGCCGATGACCGTGTTAAAGGACTTGAAGCCGGTGCCTCTGATTATATAACTAAACC
TTTTGAACCGAGAGAATTATTACTTCGGATAAATAACTTAATCAATAATTATAATAACTTTACAAAAGAAACGAATATAA
TTAAATTCGGCAATAATTTTTATAATTCCGATACAAAAGAATTTACCAAGAATAATCAAATTGTATCTCTTAGCTCTACT
GAACAAAAATTACTTGAGATATTAATAAAAAATTCCGGTAAATCTACTAGTCGTTTTGAACTGTCAAAAATAATGGGAGG
GCTTAGTATGCGTTCTATCGATGTACAAATTACAAGAATAAGAAGCAAAATAGAAGACAACCCAAAAGAGCCGAAATATC
TAAAAACTGTGCGTAATGAGGGCTATGCACTTTATATCTAA

Upstream 100 bases:

>100_bases
ATCGCAGGATCTCAGAACACAGCCTGCGACATAAGATCCCGTGGTCAAGCCACGGGATGACAATAGTGAAATACAATTTT
TTTAAATTAAACGAGTATAC

Downstream 100 bases:

>100_bases
ATTATTACAGCATATTTCAAAGAGCTTCAGACAAGATGAATTTAAAAGCGAGCCTACACAGCGTATAAAAATACGTGAGC
ACAGACGAATCTTGAAAAAT

Product: petR protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MHTYKAHILIVDDDSRILALLKQFLNKNAFLVSTASSVIEAKNLLKTSNYDLIILDVMLPEITGLDFATTIRDAGNNIPI
VMLTALSEADDRVKGLEAGASDYITKPFEPRELLLRINNLINNYNNFTKETNIIKFGNNFYNSDTKEFTKNNQIVSLSST
EQKLLEILIKNSGKSTSRFELSKIMGGLSMRSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYALYI

Sequences:

>Translated_226_residues
MHTYKAHILIVDDDSRILALLKQFLNKNAFLVSTASSVIEAKNLLKTSNYDLIILDVMLPEITGLDFATTIRDAGNNIPI
VMLTALSEADDRVKGLEAGASDYITKPFEPRELLLRINNLINNYNNFTKETNIIKFGNNFYNSDTKEFTKNNQIVSLSST
EQKLLEILIKNSGKSTSRFELSKIMGGLSMRSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYALYI
>Mature_226_residues
MHTYKAHILIVDDDSRILALLKQFLNKNAFLVSTASSVIEAKNLLKTSNYDLIILDVMLPEITGLDFATTIRDAGNNIPI
VMLTALSEADDRVKGLEAGASDYITKPFEPRELLLRINNLINNYNNFTKETNIIKFGNNFYNSDTKEFTKNNQIVSLSST
EQKLLEILIKNSGKSTSRFELSKIMGGLSMRSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYALYI

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=224, Percent_Identity=37.9464285714286, Blast_Score=158, Evalue=2e-40,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=34.9775784753363, Blast_Score=133, Evalue=8e-33,
Organism=Escherichia coli, GI1786599, Length=221, Percent_Identity=33.0316742081448, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=30.9417040358744, Blast_Score=111, Evalue=3e-26,
Organism=Escherichia coli, GI1790863, Length=227, Percent_Identity=32.5991189427313, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=28.9473684210526, Blast_Score=107, Evalue=5e-25,
Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=28.5067873303167, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=33.0396475770925, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1786911, Length=219, Percent_Identity=28.7671232876712, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=34.6320346320346, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=28.9592760180996, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=30.8370044052863, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=30, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=29.8642533936652, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1790299, Length=126, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788550, Length=106, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788192, Length=122, Percent_Identity=32.7868852459016, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1790437, Length=133, Percent_Identity=27.8195488721804, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI1788191, Length=123, Percent_Identity=30.0813008130081, Blast_Score=60, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=102, Percent_Identity=30.3921568627451, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25586; Mature: 25586

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHTYKAHILIVDDDSRILALLKQFLNKNAFLVSTASSVIEAKNLLKTSNYDLIILDVMLP
CCCEEEEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECC
EITGLDFATTIRDAGNNIPIVMLTALSEADDRVKGLEAGASDYITKPFEPRELLLRINNL
HHCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
INNYNNFTKETNIIKFGNNFYNSDTKEFTKNNQIVSLSSTEQKLLEILIKNSGKSTSRFE
HHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCHHHH
LSKIMGGLSMRSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYALYI
HHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEC
>Mature Secondary Structure
MHTYKAHILIVDDDSRILALLKQFLNKNAFLVSTASSVIEAKNLLKTSNYDLIILDVMLP
CCCEEEEEEEEECCHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEEECC
EITGLDFATTIRDAGNNIPIVMLTALSEADDRVKGLEAGASDYITKPFEPRELLLRINNL
HHCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
INNYNNFTKETNIIKFGNNFYNSDTKEFTKNNQIVSLSSTEQKLLEILIKNSGKSTSRFE
HHHHHHHCCCCCEEEECCCCCCCCHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCHHHH
LSKIMGGLSMRSIDVQITRIRSKIEDNPKEPKYLKTVRNEGYALYI
HHHHHCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]