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The map label for this gene is yecS [H]

Identifier: 158425496

GI number: 158425496

Start: 4422717

End: 4423424

Strand: Direct

Name: yecS [H]

Synonym: AZC_3872

Alternate gene names: 158425496

Gene position: 4422717-4423424 (Clockwise)

Preceding gene: 158425495

Following gene: 158425497

Centisome position: 82.36

GC content: 63.14

Gene sequence:

>708_bases
ATGGATATCATCCTCGACAATTGGCCGCTGATCCAGAAGGGCCTTGGGATGACGCTGGGCCTCGCCGTCGTCACCCTTCT
GTTTTCCACCCTCGTGTCCTTGATCCTGGGCGTGATGGCGACGCTGCACAGCCGCATGCTGCGCTGGAGCATCCACGGCT
ATGTGGAGTTTTTCCGCGCCATCCCACTGATCGTCAACGTCTTCTTCGTCTATTTCGTGCTGCCGACCCTGGGCTTAGAT
CTGAGCCCGTTCGCCGCCGTGGTGTTCGGGCTGACGCTGTGGGGCAGCGCGAATGGCATCGAGATCGTGCGCGCCGGCAT
CGAAGCGGTGCCCGCGCATCAATGGCGCAGCGCCTGGGCCTTGGGCATGCGCCAGTGGGAAGTCTACTGGCACATCGTGG
CCCCGCAGGCGATCCGGCTGATCGTTCCGCCCTTCACGGGCCTGCTCACCCTCTTGGTGCAGGCCACCTCTCTCGGCGCC
CTCGTGGGGGTGACGGAGTTCCTCAAGGTCGGCCAGATCATCATCGAGCGCTCCGCCGTCATGAATGGCGTCAGCCCGGC
CTTCCTCGTCTACGGCTTCGTCCTCGCGGTCTACTTTATCATCTGCTCCGCCCTTAGCTGGCTGAGCCGCTATCTGGAGC
GCCGCCTGGGCCGCAAGTCGAACCGCAAGCCATCCTTGGTCCCGTCAGGTATGAGAGAAGCAGTATGA

Upstream 100 bases:

>100_bases
TTCACGGCCATCGGCGCGCTCTATCTGGCGCTGGTGATCGTGCTGAGCCTCATGACATCCATCGTTGAGCACAAGCTCAG
GAAACCGTTTCGGGTCTGAC

Downstream 100 bases:

>100_bases
TGATCGAGAGCGAAGCGCACCGGTCCAAGGTCAGCCGGCGCTTGCAGGATGAAACCGCGCAAGAGATTTGCGATTTCATC
TATCTTCCCCGCCTTGCCGA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MDIILDNWPLIQKGLGMTLGLAVVTLLFSTLVSLILGVMATLHSRMLRWSIHGYVEFFRAIPLIVNVFFVYFVLPTLGLD
LSPFAAVVFGLTLWGSANGIEIVRAGIEAVPAHQWRSAWALGMRQWEVYWHIVAPQAIRLIVPPFTGLLTLLVQATSLGA
LVGVTEFLKVGQIIIERSAVMNGVSPAFLVYGFVLAVYFIICSALSWLSRYLERRLGRKSNRKPSLVPSGMREAV

Sequences:

>Translated_235_residues
MDIILDNWPLIQKGLGMTLGLAVVTLLFSTLVSLILGVMATLHSRMLRWSIHGYVEFFRAIPLIVNVFFVYFVLPTLGLD
LSPFAAVVFGLTLWGSANGIEIVRAGIEAVPAHQWRSAWALGMRQWEVYWHIVAPQAIRLIVPPFTGLLTLLVQATSLGA
LVGVTEFLKVGQIIIERSAVMNGVSPAFLVYGFVLAVYFIICSALSWLSRYLERRLGRKSNRKPSLVPSGMREAV
>Mature_235_residues
MDIILDNWPLIQKGLGMTLGLAVVTLLFSTLVSLILGVMATLHSRMLRWSIHGYVEFFRAIPLIVNVFFVYFVLPTLGLD
LSPFAAVVFGLTLWGSANGIEIVRAGIEAVPAHQWRSAWALGMRQWEVYWHIVAPQAIRLIVPPFTGLLTLLVQATSLGA
LVGVTEFLKVGQIIIERSAVMNGVSPAFLVYGFVLAVYFIICSALSWLSRYLERRLGRKSNRKPSLVPSGMREAV

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=225, Percent_Identity=31.5555555555556, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1786873, Length=222, Percent_Identity=31.5315315315315, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=30.4761904761905, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1787086, Length=222, Percent_Identity=25.6756756756757, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786874, Length=182, Percent_Identity=29.6703296703297, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082239, Length=179, Percent_Identity=29.608938547486, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787087, Length=237, Percent_Identity=26.1603375527426, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI48994930, Length=141, Percent_Identity=31.9148936170213, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1788645, Length=212, Percent_Identity=24.5283018867925, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26040; Mature: 26040

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIILDNWPLIQKGLGMTLGLAVVTLLFSTLVSLILGVMATLHSRMLRWSIHGYVEFFRA
CCCEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLIVNVFFVYFVLPTLGLDLSPFAAVVFGLTLWGSANGIEIVRAGIEAVPAHQWRSAWA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHH
LGMRQWEVYWHIVAPQAIRLIVPPFTGLLTLLVQATSLGALVGVTEFLKVGQIIIERSAV
HHHHHHHHHEEEECCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNGVSPAFLVYGFVLAVYFIICSALSWLSRYLERRLGRKSNRKPSLVPSGMREAV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC
>Mature Secondary Structure
MDIILDNWPLIQKGLGMTLGLAVVTLLFSTLVSLILGVMATLHSRMLRWSIHGYVEFFRA
CCCEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPLIVNVFFVYFVLPTLGLDLSPFAAVVFGLTLWGSANGIEIVRAGIEAVPAHQWRSAWA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHH
LGMRQWEVYWHIVAPQAIRLIVPPFTGLLTLLVQATSLGALVGVTEFLKVGQIIIERSAV
HHHHHHHHHEEEECCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNGVSPAFLVYGFVLAVYFIICSALSWLSRYLERRLGRKSNRKPSLVPSGMREAV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]