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The map label for this gene is omp2b [H]

Identifier: 158425159

GI number: 158425159

Start: 4059002

End: 4060420

Strand: Reverse

Name: omp2b [H]

Synonym: AZC_3535

Alternate gene names: 158425159

Gene position: 4060420-4059002 (Counterclockwise)

Preceding gene: 158425167

Following gene: 158425158

Centisome position: 75.62

GC content: 61.24

Gene sequence:

>1419_bases
ATGGATGTGGCTTTTTTGAGCGTTTGCAGCGCTTTTTGGACGGGATCCAATGTCCGGGTCGCTGCTTTTGCTTGCGCTTG
CAAGCGGGGCGCTGGATGGTGCAAAAAACGTTGGCTTCGAGAAATGATACAACATATCATCCGCCGGAATCAGGAGGCTG
GGATGAAGGTCAAGGGGTTGGTCGCTGGCTGCGGCCTTGCAGTGGCGATGATCGGGGGAGCTAACGCTGCGGATCTGCCG
GTGAAGGCGAAGGGCGTTGACTATGTGAAGGTCTGCACGGCCTACGGACAGGGCTTCTATTACATTCCCGGCACGGACAC
CTGCCTGCGCATCGGCGGCTATCTGTGGGCGGAAGGCTATTACAATACCTATACGAACTACCCTTCGGTCAATAACAAGA
CCTATTCCATCGCCACCGCCGGCCTGATCTGGGACGCGCGCAGCCAGACCGAATATGGCACGCTGCGCTCCTACTTCGAC
CTGCGCTTCCGCTGGCGCTCCTCCGACCCGTGGTCGAACGGCCCCAACGGCGTCGATGTGGACGTGTGGAACGCCTATAT
CCAGTTTGCCGGATTCACCTTCGGACACGCCCAGTCCTTCTTCGACTTCTACGCCAATGCCGGCGTGCTCGGTACCGATC
CGGCGACCATCGGCGACGACACGCGCCTCAATCTCATCGCCTATACCCATGAGTTCATGGAGGGGCTGAGCGCGACCGTC
TCCATCGAGGATTCGGCCGATCGTCTCGCAGGCGTCGTGCCGCAGGATCCCGCCGCCTTCGGGACCGACAGCCTTCAGAC
CGGTTCGCATGTGCCGGATTTCGTCGCCAACCTGCGGGCGGAAGGCAAGTGGGGCTCGGCCCAGGTTTCCGGCGCGCTGC
ATCAGGTGCGGGCGCTTGATCTCAACAACCAGTTCTCCGCCACCGACACCTGGGGCTATGCCCTGCAGGCCGGCGTGATG
GTGAACCTGCCCATGCTCGCGGATGGCGACAATTTCTATCTGCAGGCGGCCTATGCCAATGGCGCCATGTCCTATCTCGG
CCTTCAGAACCCGAGTGGCGCCTACATCATTCCCGACGCCTATCTCGGCCTTGCCGGCCTGTCGCTGGTCAGCGGCTGGA
ACATCACCGCCCAGTTGCTGCACAACTGGAACGACAAGTGGAGCACCACGATCTTCGGCGGCTATGCGGCCTTCGACGTG
AACAATCCGGTGGCGCAGGCCTCTTACGGCTCCACCGGCGGCAACAACTACAATGTGGGTGGCAACCTCGCCTGGACGCC
GGTGACCAATCTCACCATCGCGCTCCAGTATGACTACACGGTCATGGAGGTGAACAATTACGTGGCGACCGACTTCTCGC
CGGCGCTGGCGTCCACGAAGGCCCATCGCGGCCTGCTGTTCGTGTCGCGCAATTTCTGA

Upstream 100 bases:

>100_bases
TTCCCGTTATCCATTCGATCGTTCCCCGGACGCAGCTTGCGCTGGGGCACGTCTGTGACGTGGTGACGCTGTCATCCCCA
CGCAATGGGTAACGTGACAG

Downstream 100 bases:

>100_bases
CGACGCTGGCGGAGCGCAAGCTCCGCCACGCACCATCTGCGGCGTGCCGTACGACACGGCCGCATTTTCCTGGTCGATCG
ATCACCTGGAACCACCAGCC

Product: outer membrane protein, porin precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MDVAFLSVCSAFWTGSNVRVAAFACACKRGAGWCKKRWLREMIQHIIRRNQEAGMKVKGLVAGCGLAVAMIGGANAADLP
VKAKGVDYVKVCTAYGQGFYYIPGTDTCLRIGGYLWAEGYYNTYTNYPSVNNKTYSIATAGLIWDARSQTEYGTLRSYFD
LRFRWRSSDPWSNGPNGVDVDVWNAYIQFAGFTFGHAQSFFDFYANAGVLGTDPATIGDDTRLNLIAYTHEFMEGLSATV
SIEDSADRLAGVVPQDPAAFGTDSLQTGSHVPDFVANLRAEGKWGSAQVSGALHQVRALDLNNQFSATDTWGYALQAGVM
VNLPMLADGDNFYLQAAYANGAMSYLGLQNPSGAYIIPDAYLGLAGLSLVSGWNITAQLLHNWNDKWSTTIFGGYAAFDV
NNPVAQASYGSTGGNNYNVGGNLAWTPVTNLTIALQYDYTVMEVNNYVATDFSPALASTKAHRGLLFVSRNF

Sequences:

>Translated_472_residues
MDVAFLSVCSAFWTGSNVRVAAFACACKRGAGWCKKRWLREMIQHIIRRNQEAGMKVKGLVAGCGLAVAMIGGANAADLP
VKAKGVDYVKVCTAYGQGFYYIPGTDTCLRIGGYLWAEGYYNTYTNYPSVNNKTYSIATAGLIWDARSQTEYGTLRSYFD
LRFRWRSSDPWSNGPNGVDVDVWNAYIQFAGFTFGHAQSFFDFYANAGVLGTDPATIGDDTRLNLIAYTHEFMEGLSATV
SIEDSADRLAGVVPQDPAAFGTDSLQTGSHVPDFVANLRAEGKWGSAQVSGALHQVRALDLNNQFSATDTWGYALQAGVM
VNLPMLADGDNFYLQAAYANGAMSYLGLQNPSGAYIIPDAYLGLAGLSLVSGWNITAQLLHNWNDKWSTTIFGGYAAFDV
NNPVAQASYGSTGGNNYNVGGNLAWTPVTNLTIALQYDYTVMEVNNYVATDFSPALASTKAHRGLLFVSRNF
>Mature_472_residues
MDVAFLSVCSAFWTGSNVRVAAFACACKRGAGWCKKRWLREMIQHIIRRNQEAGMKVKGLVAGCGLAVAMIGGANAADLP
VKAKGVDYVKVCTAYGQGFYYIPGTDTCLRIGGYLWAEGYYNTYTNYPSVNNKTYSIATAGLIWDARSQTEYGTLRSYFD
LRFRWRSSDPWSNGPNGVDVDVWNAYIQFAGFTFGHAQSFFDFYANAGVLGTDPATIGDDTRLNLIAYTHEFMEGLSATV
SIEDSADRLAGVVPQDPAAFGTDSLQTGSHVPDFVANLRAEGKWGSAQVSGALHQVRALDLNNQFSATDTWGYALQAGVM
VNLPMLADGDNFYLQAAYANGAMSYLGLQNPSGAYIIPDAYLGLAGLSLVSGWNITAQLLHNWNDKWSTTIFGGYAAFDV
NNPVAQASYGSTGGNNYNVGGNLAWTPVTNLTIALQYDYTVMEVNNYVATDFSPALASTKAHRGLLFVSRNF

Specific function: Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alphaproteobacteria porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003684 [H]

Pfam domain/function: PF02530 Porin_2 [H]

EC number: NA

Molecular weight: Translated: 51179; Mature: 51179

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVAFLSVCSAFWTGSNVRVAAFACACKRGAGWCKKRWLREMIQHIIRRNQEAGMKVKGL
CCHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCEEEEE
VAGCGLAVAMIGGANAADLPVKAKGVDYVKVCTAYGQGFYYIPGTDTCLRIGGYLWAEGY
EHHCCEEEEEECCCCCCCCCEEECCCCCEEHHHHHCCCEEEECCCCHHHHCCCEEEECCC
YNTYTNYPSVNNKTYSIATAGLIWDARSQTEYGTLRSYFDLRFRWRSSDPWSNGPNGVDV
CCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCCEE
DVWNAYIQFAGFTFGHAQSFFDFYANAGVLGTDPATIGDDTRLNLIAYTHEFMEGLSATV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEEHHHHHHCCCEEE
SIEDSADRLAGVVPQDPAAFGTDSLQTGSHVPDFVANLRAEGKWGSAQVSGALHQVRALD
EECCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEEEEC
LNNQFSATDTWGYALQAGVMVNLPMLADGDNFYLQAAYANGAMSYLGLQNPSGAYIIPDA
CCCCCCCCCCCCHHEECCEEEECCEEECCCCEEEEEEECCCCEEEEECCCCCCCEECCHH
YLGLAGLSLVSGWNITAQLLHNWNDKWSTTIFGGYAAFDVNNPVAQASYGSTGGNNYNVG
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCC
GNLAWTPVTNLTIALQYDYTVMEVNNYVATDFSPALASTKAHRGLLFVSRNF
CEEEEEEECCEEEEEEECEEEEEECCEEECCCCHHHHCCCCCCEEEEEECCC
>Mature Secondary Structure
MDVAFLSVCSAFWTGSNVRVAAFACACKRGAGWCKKRWLREMIQHIIRRNQEAGMKVKGL
CCHHHHHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCHHCCCEEEEE
VAGCGLAVAMIGGANAADLPVKAKGVDYVKVCTAYGQGFYYIPGTDTCLRIGGYLWAEGY
EHHCCEEEEEECCCCCCCCCEEECCCCCEEHHHHHCCCEEEECCCCHHHHCCCEEEECCC
YNTYTNYPSVNNKTYSIATAGLIWDARSQTEYGTLRSYFDLRFRWRSSDPWSNGPNGVDV
CCCCCCCCCCCCCEEEEEEEEEEEECCCCCCHHHHHHEEEEEEEECCCCCCCCCCCCCEE
DVWNAYIQFAGFTFGHAQSFFDFYANAGVLGTDPATIGDDTRLNLIAYTHEFMEGLSATV
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEEHHHHHHCCCEEE
SIEDSADRLAGVVPQDPAAFGTDSLQTGSHVPDFVANLRAEGKWGSAQVSGALHQVRALD
EECCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHEEEEC
LNNQFSATDTWGYALQAGVMVNLPMLADGDNFYLQAAYANGAMSYLGLQNPSGAYIIPDA
CCCCCCCCCCCCHHEECCEEEECCEEECCCCEEEEEEECCCCEEEEECCCCCCCEECCHH
YLGLAGLSLVSGWNITAQLLHNWNDKWSTTIFGGYAAFDVNNPVAQASYGSTGGNNYNVG
HHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEECCEEEEECCCCCCCCCCCCCCCCCCCCC
GNLAWTPVTNLTIALQYDYTVMEVNNYVATDFSPALASTKAHRGLLFVSRNF
CEEEEEEECCEEEEEEECEEEEEECCEEECCCCHHHHCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2509359 [H]