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The map label for this gene is deoR [H]

Identifier: 158424362

GI number: 158424362

Start: 3108031

End: 3108795

Strand: Reverse

Name: deoR [H]

Synonym: AZC_2738

Alternate gene names: 158424362

Gene position: 3108795-3108031 (Counterclockwise)

Preceding gene: 158424364

Following gene: 158424355

Centisome position: 57.89

GC content: 65.62

Gene sequence:

>765_bases
ATGGACCTTACTGATCGCCAGCAGGAGATTCTCGCCGTCGCCCGGTCTTCCGGTCGCGTCATGGTCGAGGACCTCGCCCT
TCGTTTCCAGGTGACGCCGCAGACCATCCGCAAGGACCTGAACGACCTCTGCGACCGCCAGCTTCTGGCCCGGACCCATG
GCGGGGCGGTGGTCACCTCCAGCGTCGAGAACGTGGCCTATGAAGCGCGGCGCCTGATTGCGGATGCCGAGAAGCGGGCC
ATCGGCCGGGCGGCGGCGGCGCTCATTCCCGACAAGTCTTCGCTGTTCATCAATATCGGCACCACCACCGAGGAGGTGGC
GAAGTCGCTCGGAGACCGGCGCGACCTGCTCGTCATCACCAACAATCTGCACGTGGCGATGCAGCTTTATCCCAACCCCG
ACATGCGGGTGATCGTCGCCGGCGGGCAGGTGCGCCACAGCGACGGGGCGGTGATCGGCGCCTCCGCCATCGACCTCATC
CAGCAGTTCAAGGTGGACCTTGCCATCATCGGCGCCTCGGCCATCGACGAGGATGGAGCGCTGCTGGATTTCGACTATCA
GGAGGTACGCGTCAGCCAGGCCATCATCGCCAATGCCCGGCGCGTGGTGCTGGTCTCCGACCATCTGAAGGTCGGCCGCT
CGGCGCCGGTGCGCATCGCCCACCTGAAGCAGGTGGACGTGTTCGTCACCGACAAGATGGTCTCCCCCCGCCTCGCCAAG
GTGTGCCGTGAGGCGAATGTGGAAGTGATCGAGGCGGGGGAGTAG

Upstream 100 bases:

>100_bases
TTCACCATTTCAAGCTATGCATCCGTCGGCCCCGGCCGGCGCCTGCGCGGATCACACGCGGCGCTTGCAATGCTCCGGGC
CTCGGAGGCAGTGTGCCGCC

Downstream 100 bases:

>100_bases
GCCCGTCCCCTCAGGCCGGACGCACGTTCCAGAACACCGCCGTGCCGTTCATTATGCCGGTGATCGCGCTGCGATAGGCG
GTGGGCTGCTTGTAGAGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MDLTDRQQEILAVARSSGRVMVEDLALRFQVTPQTIRKDLNDLCDRQLLARTHGGAVVTSSVENVAYEARRLIADAEKRA
IGRAAAALIPDKSSLFINIGTTTEEVAKSLGDRRDLLVITNNLHVAMQLYPNPDMRVIVAGGQVRHSDGAVIGASAIDLI
QQFKVDLAIIGASAIDEDGALLDFDYQEVRVSQAIIANARRVVLVSDHLKVGRSAPVRIAHLKQVDVFVTDKMVSPRLAK
VCREANVEVIEAGE

Sequences:

>Translated_254_residues
MDLTDRQQEILAVARSSGRVMVEDLALRFQVTPQTIRKDLNDLCDRQLLARTHGGAVVTSSVENVAYEARRLIADAEKRA
IGRAAAALIPDKSSLFINIGTTTEEVAKSLGDRRDLLVITNNLHVAMQLYPNPDMRVIVAGGQVRHSDGAVIGASAIDLI
QQFKVDLAIIGASAIDEDGALLDFDYQEVRVSQAIIANARRVVLVSDHLKVGRSAPVRIAHLKQVDVFVTDKMVSPRLAK
VCREANVEVIEAGE
>Mature_254_residues
MDLTDRQQEILAVARSSGRVMVEDLALRFQVTPQTIRKDLNDLCDRQLLARTHGGAVVTSSVENVAYEARRLIADAEKRA
IGRAAAALIPDKSSLFINIGTTTEEVAKSLGDRRDLLVITNNLHVAMQLYPNPDMRVIVAGGQVRHSDGAVIGASAIDLI
QQFKVDLAIIGASAIDEDGALLDFDYQEVRVSQAIIANARRVVLVSDHLKVGRSAPVRIAHLKQVDVFVTDKMVSPRLAK
VCREANVEVIEAGE

Specific function: Repressor of the glycerol-3-phosphate regulon [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789829, Length=231, Percent_Identity=45.8874458874459, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI87082344, Length=255, Percent_Identity=38.4313725490196, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1788069, Length=252, Percent_Identity=28.968253968254, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789059, Length=250, Percent_Identity=30, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789519, Length=255, Percent_Identity=29.0196078431373, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI226510968, Length=228, Percent_Identity=29.8245614035088, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1787063, Length=234, Percent_Identity=27.3504273504274, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790753, Length=249, Percent_Identity=24.8995983935743, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=27.4678111587983, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27653; Mature: 27653

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTDRQQEILAVARSSGRVMVEDLALRFQVTPQTIRKDLNDLCDRQLLARTHGGAVVTS
CCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEH
SVENVAYEARRLIADAEKRAIGRAAAALIPDKSSLFINIGTTTEEVAKSLGDRRDLLVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE
NNLHVAMQLYPNPDMRVIVAGGQVRHSDGAVIGASAIDLIQQFKVDLAIIGASAIDEDGA
CCEEEEEEEECCCCEEEEEECCEEECCCCCEECHHHHHHHHHHHHCEEEEECCCCCCCCC
LLDFDYQEVRVSQAIIANARRVVLVSDHLKVGRSAPVRIAHLKQVDVFVTDKMVSPRLAK
EEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHH
VCREANVEVIEAGE
HHHHCCCEEEECCC
>Mature Secondary Structure
MDLTDRQQEILAVARSSGRVMVEDLALRFQVTPQTIRKDLNDLCDRQLLARTHGGAVVTS
CCCCHHHHHHHHHHHCCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEH
SVENVAYEARRLIADAEKRAIGRAAAALIPDKSSLFINIGTTTEEVAKSLGDRRDLLVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCCEEEEE
NNLHVAMQLYPNPDMRVIVAGGQVRHSDGAVIGASAIDLIQQFKVDLAIIGASAIDEDGA
CCEEEEEEEECCCCEEEEEECCEEECCCCCEECHHHHHHHHHHHHCEEEEECCCCCCCCC
LLDFDYQEVRVSQAIIANARRVVLVSDHLKVGRSAPVRIAHLKQVDVFVTDKMVSPRLAK
EEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHH
VCREANVEVIEAGE
HHHHCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8752340; 10984043 [H]