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The map label for this gene is araC [H]

Identifier: 158424364

GI number: 158424364

Start: 3110916

End: 3111938

Strand: Reverse

Name: araC [H]

Synonym: AZC_2740

Alternate gene names: 158424364

Gene position: 3111938-3110916 (Counterclockwise)

Preceding gene: 158424367

Following gene: 158424362

Centisome position: 57.95

GC content: 68.13

Gene sequence:

>1023_bases
GTGCTTGACGCAGCCACCATAGGGCGGTTGCATCTGGCGCAAATGCCAAATGTCCCTCGCTTTCTGCCAATGCCGGTCCG
CCGGGTCGAAGTCCTGGCCTTCCCTGATGTCCAGTTGCTGGATGTCGCCGGTTCCCTGCAGGTCTTCGCGACGGCCAACG
ATCTGGCCAAAAGCGCCGGAGAACCCGCGCCCTATGAGATCGAGACCGTGGCGCGGGCACCCGAGGTGCGTACGTCCTCG
GGCCTTCGGCTTGCCACCACAACGATCCCGGACGCGGAAGCCCCGCTCGACACCTTCGTTGTCGCCGGCGGGCGCGGGGT
GAATGTCGCGATCCTCGACCCGGAAATGGTGGATCTCGTCCGGCGTCGATCCGCCGCCGCCCGCCGCACCGCTTCTGTGT
GCAGCGGCGCCTTCCTGCTGGCGCAGGCGGGGCTGCTCGACGGCCGGCGGGCGGTGACCCACTGGCAGCGCTGCGCGGAA
TTCTCCCGGACCTTCCCTAATGTGAAGCTGGAGCCCGATCCCATCTTCGTGCGAGACGGCGACATCTGGACGTCCGCCGG
CATCACGGCAGGGATCGATCTTGCGCTGGCGCTGGTGGAGGAGGATCTGGGCCACGGTCCGGCTCTTGCGGTGGCCCGCC
AATTGGTTGTCTTCCTCAAACGGCCCGGCGGCCAGGCGCAGTTCAGCGCCGCCCTCGACATGCAGGACGGCGGCGGGCGG
TTTGACGCGCTGCACGGCTGGATGCTGGAGAACCTGAAAGCCGATCTGTCGGTGCCGGTGCTGGCCGATCAGGCGGGAAT
GAGCGCGCGCAGCTTCGCTCGCCATTATCAGGAGACCACCGGCCGCACGCCGGCGCGTGCTGTCGAACAGATGCGGGTGG
AAGCCGCGCGCAGGCTTCTGGAGGCACGCACCAGCGTCAGCGAAGCCGCGCGCCGCTGCGGCTTCGGCACCGAGGAGACC
ATGCGGCGCAGCTTCCTGCGGCTGCTCTCAGTTTCCCCGCAGGCCTATCGGGAGCGGTTCTAG

Upstream 100 bases:

>100_bases
TCGGGCGCCGAGGCGAACACCTCATAGGGGCCGGTCAGGTCCAACTGCTGGACATCAGGAAAGGCAAGGATGCCGAAACG
AAGAGGCATGGGACACTCCG

Downstream 100 bases:

>100_bases
CTGAACTGCCCCGCGCCCGCGAAGGGCGCGGGGTAGGCGGCATTATGCGGCGTTGAGATCGCGGACGAAGGTTTCCACCA
CCTCCCGCAGGTCGGCGGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MLDAATIGRLHLAQMPNVPRFLPMPVRRVEVLAFPDVQLLDVAGSLQVFATANDLAKSAGEPAPYEIETVARAPEVRTSS
GLRLATTTIPDAEAPLDTFVVAGGRGVNVAILDPEMVDLVRRRSAAARRTASVCSGAFLLAQAGLLDGRRAVTHWQRCAE
FSRTFPNVKLEPDPIFVRDGDIWTSAGITAGIDLALALVEEDLGHGPALAVARQLVVFLKRPGGQAQFSAALDMQDGGGR
FDALHGWMLENLKADLSVPVLADQAGMSARSFARHYQETTGRTPARAVEQMRVEAARRLLEARTSVSEAARRCGFGTEET
MRRSFLRLLSVSPQAYRERF

Sequences:

>Translated_340_residues
MLDAATIGRLHLAQMPNVPRFLPMPVRRVEVLAFPDVQLLDVAGSLQVFATANDLAKSAGEPAPYEIETVARAPEVRTSS
GLRLATTTIPDAEAPLDTFVVAGGRGVNVAILDPEMVDLVRRRSAAARRTASVCSGAFLLAQAGLLDGRRAVTHWQRCAE
FSRTFPNVKLEPDPIFVRDGDIWTSAGITAGIDLALALVEEDLGHGPALAVARQLVVFLKRPGGQAQFSAALDMQDGGGR
FDALHGWMLENLKADLSVPVLADQAGMSARSFARHYQETTGRTPARAVEQMRVEAARRLLEARTSVSEAARRCGFGTEET
MRRSFLRLLSVSPQAYRERF
>Mature_340_residues
MLDAATIGRLHLAQMPNVPRFLPMPVRRVEVLAFPDVQLLDVAGSLQVFATANDLAKSAGEPAPYEIETVARAPEVRTSS
GLRLATTTIPDAEAPLDTFVVAGGRGVNVAILDPEMVDLVRRRSAAARRTASVCSGAFLLAQAGLLDGRRAVTHWQRCAE
FSRTFPNVKLEPDPIFVRDGDIWTSAGITAGIDLALALVEEDLGHGPALAVARQLVVFLKRPGGQAQFSAALDMQDGGGR
FDALHGWMLENLKADLSVPVLADQAGMSARSFARHYQETTGRTPARAVEQMRVEAARRLLEARTSVSEAARRCGFGTEET
MRRSFLRLLSVSPQAYRERF

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36872; Mature: 36872

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDAATIGRLHLAQMPNVPRFLPMPVRRVEVLAFPDVQLLDVAGSLQVFATANDLAKSAG
CCCCHHHCHHHHHHCCCCCCCCCCCHHHEEEEECCCCCEEECCCCEEEEEEHHHHHHHCC
EPAPYEIETVARAPEVRTSSGLRLATTTIPDAEAPLDTFVVAGGRGVNVAILDPEMVDLV
CCCCEEHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCEEEEECHHHHHHH
RRRSAAARRTASVCSGAFLLAQAGLLDGRRAVTHWQRCAEFSRTFPNVKLEPDPIFVRDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEECC
DIWTSAGITAGIDLALALVEEDLGHGPALAVARQLVVFLKRPGGQAQFSAALDMQDGGGR
CEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
FDALHGWMLENLKADLSVPVLADQAGMSARSFARHYQETTGRTPARAVEQMRVEAARRLL
HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EARTSVSEAARRCGFGTEETMRRSFLRLLSVSPQAYRERF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MLDAATIGRLHLAQMPNVPRFLPMPVRRVEVLAFPDVQLLDVAGSLQVFATANDLAKSAG
CCCCHHHCHHHHHHCCCCCCCCCCCHHHEEEEECCCCCEEECCCCEEEEEEHHHHHHHCC
EPAPYEIETVARAPEVRTSSGLRLATTTIPDAEAPLDTFVVAGGRGVNVAILDPEMVDLV
CCCCEEHHHHHCCCCCCCCCCCEEEEECCCCCCCCHHHEEEECCCCCEEEEECHHHHHHH
RRRSAAARRTASVCSGAFLLAQAGLLDGRRAVTHWQRCAEFSRTFPNVKLEPDPIFVRDG
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEEEECC
DIWTSAGITAGIDLALALVEEDLGHGPALAVARQLVVFLKRPGGQAQFSAALDMQDGGGR
CEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
FDALHGWMLENLKADLSVPVLADQAGMSARSFARHYQETTGRTPARAVEQMRVEAARRLL
HHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
EARTSVSEAARRCGFGTEETMRRSFLRLLSVSPQAYRERF
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]