Click here to switch to the map view.

The map label for this gene is yliB [C]

Identifier: 158424361

GI number: 158424361

Start: 3106437

End: 3108020

Strand: Direct

Name: yliB [C]

Synonym: AZC_2737

Alternate gene names: 158424361

Gene position: 3106437-3108020 (Clockwise)

Preceding gene: 158424360

Following gene: 158424363

Centisome position: 57.85

GC content: 67.42

Gene sequence:

>1584_bases
ATGCTGCTCTCCCGGCGCTCCTTCCTGCGTGCGGCGGCTGCCGCGCCGCTGGTGTCCCTGCCCTCCATCGTGCGGGCGCA
GTCGCAGACCACGCTGCGGTTCGTGCCGGTGATCGACCTCACCTTCACCGACCCGATCTATTCCACCGCGCAGGTGTCCC
GGAACCATGGCTTCATGGTCTACGACACGCTCTACGGCATGAATTCGGCCCTGGAAGTCTCGCCGCAGATGGTGGAAGGC
CATCTCGTCAGCAATGACGGGCTGCAATGGGACCTGACACTCCGCGAGGGCCTCGTGTGGCACGATGGGGAGAAGGTGCT
CTCGCGCGACTGCGTGGCCAGCATCAAGCGCTGGGCCAAGCGCGACGGCTTCGGGGCGGAATTGATGGCCGCCACCGATG
AGATCTCCGCCCCCGACGACCGCACCATCCGTTTCCGCCTCAAGCGCCCCTTCCCCTTGCTGCCCTCCGCCCTCGGCAAG
GCGGCGGTGCAGGCGCCCTTCATGATGCCGGAGCGCCACGCGACGCAGGATCCGTTCAAGCCGCTCACCGAGGTGGTAGG
CTCCGGCCCCTTCCGCTTCGTGGCCGACGAGCGGGTGCAGGGCGCGCGCAACGTCTATGCCCGCTTCGAGCGCTACAAGC
CGCGCGAGAGCGGCACGCCGGACTGGACCGCCGGACCGAAGATCGTCCATTACGACCGCGTGGTCTGGACCACCATGCCA
GACGCCGCGACGGGCGCCGCCGCGCTCCAGACCGGCGAGCAGGACTGGCAGGAAACCGCTCCTCACGACCTGCTGCCCAT
CCTCAAAAAGGCGAAGGGCGTCTCCACCCGCATTCTCGATCCGCGCGGCTATGCCTGCATGTTGCGGGTGAACCACCTCC
AGCCGCCCTTCGACAATCCGGCCATCCGCCGCGCCCTGTTCGGCGCCATCGACCAGTCCGCCTTCATGACGGCAGTGGCG
GGGGATGATCCGCAGTACCAGACGACGCCCATCGGCTTCTTCGCCCCCGGCACGCCCTTCGCGAGCGACGTGGGGCTCGA
TGTGTTCAACGGCCCGCGGGACTATGCCAAGGTCAAGGCGGCGCTGAAGGCCGCCGGCTATAATGGCGAGAAGGTGGTGC
TGATGGTGCCGGCCAATTCCGCCGCCCAGAAGCCGCTCGGGGATGTCGCCTTCGACATGCTCCAGCAGGTGGGCATGAAC
GTCGAATATGCCGCCATGGAGTTCGGGGCCATCCTCCAGCGCCAGCTCAAGAAGGATCCGGTGGATCAGGGCGGCTGGAG
CGCAGGCGTCGGCAACTGGCAGGGCATCGACTGGCTCAACCCCGCAGGAAACACGAACCTGCGCGGCGATGCCGGCACGG
CGGGCTGGTACAAGAGCGAGAAGATGGGCGCGCTGCGCGCCCAGTGGCTCTCCGCACCGACACTGGCGGAGCAGCAGCGC
ATCTGCCGGGACATCCAGACCCTCGCCTTCGAGGAGGTGCCTTACTATCCCGTCGGCCTCTACAAGCAGCCCACCGCCTA
TCGCAGCGCGATCACCGGCATAATGAACGGCACGGCGGTGTTCTGGAACGTGCGTCCGGCCTGA

Upstream 100 bases:

>100_bases
CCATTTCGAGGCGCACGAGCCGAAAGCCTGATCGCCCGCCGACGCTCCCGCCCGGCCCATCTGGCCGGGCGTTCTCCTTC
CCCCAACAAGGCCCTGCCCG

Downstream 100 bases:

>100_bases
GGGGACGGGCCTACTCCCCCGCCTCGATCACTTCCACATTCGCCTCACGGCACACCTTGGCGAGGCGGGGGGAGACCATC
TTGTCGGTGACGAACACGTC

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 527

Protein sequence:

>527_residues
MLLSRRSFLRAAAAAPLVSLPSIVRAQSQTTLRFVPVIDLTFTDPIYSTAQVSRNHGFMVYDTLYGMNSALEVSPQMVEG
HLVSNDGLQWDLTLREGLVWHDGEKVLSRDCVASIKRWAKRDGFGAELMAATDEISAPDDRTIRFRLKRPFPLLPSALGK
AAVQAPFMMPERHATQDPFKPLTEVVGSGPFRFVADERVQGARNVYARFERYKPRESGTPDWTAGPKIVHYDRVVWTTMP
DAATGAAALQTGEQDWQETAPHDLLPILKKAKGVSTRILDPRGYACMLRVNHLQPPFDNPAIRRALFGAIDQSAFMTAVA
GDDPQYQTTPIGFFAPGTPFASDVGLDVFNGPRDYAKVKAALKAAGYNGEKVVLMVPANSAAQKPLGDVAFDMLQQVGMN
VEYAAMEFGAILQRQLKKDPVDQGGWSAGVGNWQGIDWLNPAGNTNLRGDAGTAGWYKSEKMGALRAQWLSAPTLAEQQR
ICRDIQTLAFEEVPYYPVGLYKQPTAYRSAITGIMNGTAVFWNVRPA

Sequences:

>Translated_527_residues
MLLSRRSFLRAAAAAPLVSLPSIVRAQSQTTLRFVPVIDLTFTDPIYSTAQVSRNHGFMVYDTLYGMNSALEVSPQMVEG
HLVSNDGLQWDLTLREGLVWHDGEKVLSRDCVASIKRWAKRDGFGAELMAATDEISAPDDRTIRFRLKRPFPLLPSALGK
AAVQAPFMMPERHATQDPFKPLTEVVGSGPFRFVADERVQGARNVYARFERYKPRESGTPDWTAGPKIVHYDRVVWTTMP
DAATGAAALQTGEQDWQETAPHDLLPILKKAKGVSTRILDPRGYACMLRVNHLQPPFDNPAIRRALFGAIDQSAFMTAVA
GDDPQYQTTPIGFFAPGTPFASDVGLDVFNGPRDYAKVKAALKAAGYNGEKVVLMVPANSAAQKPLGDVAFDMLQQVGMN
VEYAAMEFGAILQRQLKKDPVDQGGWSAGVGNWQGIDWLNPAGNTNLRGDAGTAGWYKSEKMGALRAQWLSAPTLAEQQR
ICRDIQTLAFEEVPYYPVGLYKQPTAYRSAITGIMNGTAVFWNVRPA
>Mature_527_residues
MLLSRRSFLRAAAAAPLVSLPSIVRAQSQTTLRFVPVIDLTFTDPIYSTAQVSRNHGFMVYDTLYGMNSALEVSPQMVEG
HLVSNDGLQWDLTLREGLVWHDGEKVLSRDCVASIKRWAKRDGFGAELMAATDEISAPDDRTIRFRLKRPFPLLPSALGK
AAVQAPFMMPERHATQDPFKPLTEVVGSGPFRFVADERVQGARNVYARFERYKPRESGTPDWTAGPKIVHYDRVVWTTMP
DAATGAAALQTGEQDWQETAPHDLLPILKKAKGVSTRILDPRGYACMLRVNHLQPPFDNPAIRRALFGAIDQSAFMTAVA
GDDPQYQTTPIGFFAPGTPFASDVGLDVFNGPRDYAKVKAALKAAGYNGEKVVLMVPANSAAQKPLGDVAFDMLQQVGMN
VEYAAMEFGAILQRQLKKDPVDQGGWSAGVGNWQGIDWLNPAGNTNLRGDAGTAGWYKSEKMGALRAQWLSAPTLAEQQR
ICRDIQTLAFEEVPYYPVGLYKQPTAYRSAITGIMNGTAVFWNVRPA

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=495, Percent_Identity=26.6666666666667, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787762, Length=433, Percent_Identity=22.1709006928406, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57969; Mature: 57969

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLSRRSFLRAAAAAPLVSLPSIVRAQSQTTLRFVPVIDLTFTDPIYSTAQVSRNHGFMV
CCCCHHHHHHHHHHCCHHHCHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCEEE
YDTLYGMNSALEVSPQMVEGHLVSNDGLQWDLTLREGLVWHDGEKVLSRDCVASIKRWAK
EEHHHCCCCCEECCHHHHCCEEEECCCCEEEEEHHCCEEEECCHHHHHHHHHHHHHHHHH
RDGFGAELMAATDEISAPDDRTIRFRLKRPFPLLPSALGKAAVQAPFMMPERHATQDPFK
CCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
PLTEVVGSGPFRFVADERVQGARNVYARFERYKPRESGTPDWTAGPKIVHYDRVVWTTMP
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECEEEEEECC
DAATGAAALQTGEQDWQETAPHDLLPILKKAKGVSTRILDPRGYACMLRVNHLQPPFDNP
CCCCCHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCH
AIRRALFGAIDQSAFMTAVAGDDPQYQTTPIGFFAPGTPFASDVGLDVFNGPRDYAKVKA
HHHHHHHHHHCHHHHEEEECCCCCCCEECCEEEECCCCCCHHHCCCCCCCCCHHHHHHHH
ALKAAGYNGEKVVLMVPANSAAQKPLGDVAFDMLQQVGMNVEYAAMEFGAILQRQLKKDP
HHHHCCCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCC
VDQGGWSAGVGNWQGIDWLNPAGNTNLRGDAGTAGWYKSEKMGALRAQWLSAPTLAEQQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
ICRDIQTLAFEEVPYYPVGLYKQPTAYRSAITGIMNGTAVFWNVRPA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC
>Mature Secondary Structure
MLLSRRSFLRAAAAAPLVSLPSIVRAQSQTTLRFVPVIDLTFTDPIYSTAQVSRNHGFMV
CCCCHHHHHHHHHHCCHHHCHHHHHHCCCCEEEEEEEEEEEECCCCHHHHHHHCCCCEEE
YDTLYGMNSALEVSPQMVEGHLVSNDGLQWDLTLREGLVWHDGEKVLSRDCVASIKRWAK
EEHHHCCCCCEECCHHHHCCEEEECCCCEEEEEHHCCEEEECCHHHHHHHHHHHHHHHHH
RDGFGAELMAATDEISAPDDRTIRFRLKRPFPLLPSALGKAAVQAPFMMPERHATQDPFK
CCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHH
PLTEVVGSGPFRFVADERVQGARNVYARFERYKPRESGTPDWTAGPKIVHYDRVVWTTMP
HHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECEEEEEECC
DAATGAAALQTGEQDWQETAPHDLLPILKKAKGVSTRILDPRGYACMLRVNHLQPPFDNP
CCCCCHHHHHCCHHHHHHCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCCCCH
AIRRALFGAIDQSAFMTAVAGDDPQYQTTPIGFFAPGTPFASDVGLDVFNGPRDYAKVKA
HHHHHHHHHHCHHHHEEEECCCCCCCEECCEEEECCCCCCHHHCCCCCCCCCHHHHHHHH
ALKAAGYNGEKVVLMVPANSAAQKPLGDVAFDMLQQVGMNVEYAAMEFGAILQRQLKKDP
HHHHCCCCCCEEEEEECCCCHHCCCHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCC
VDQGGWSAGVGNWQGIDWLNPAGNTNLRGDAGTAGWYKSEKMGALRAQWLSAPTLAEQQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
ICRDIQTLAFEEVPYYPVGLYKQPTAYRSAITGIMNGTAVFWNVRPA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]