Click here to switch to the map view.

The map label for this gene is ydcV [H]

Identifier: 158424347

GI number: 158424347

Start: 3092574

End: 3093371

Strand: Direct

Name: ydcV [H]

Synonym: AZC_2723

Alternate gene names: 158424347

Gene position: 3092574-3093371 (Clockwise)

Preceding gene: 158424346

Following gene: 158424348

Centisome position: 57.59

GC content: 64.41

Gene sequence:

>798_bases
ATGCTCTCCCTCAAAATCGGCCGCTTCCTCTATCTCGCAGCCAACTGGGCGGTGCTGGCCTTTCTGCTGCTGCCCATCGC
CATCATCTTCGTCTTCGCGCTCAATCCCACGCCCTATATCGAGTTTCCACCGGTCGGCATCTCGCTGAAGTGGTTCGATA
AATTCTTCGCCTCCAGCCAGTTCATGTCGGCGCTCGCGCTGAGCCTTGAGGTGGCGGCGCTCACCACCATCGCCGCGACC
GTTCTCGGCGCCAGCGCGGCGCTCGGCATTGCGCGGGGCAATGTGCCCGGCTCGCGCTTCATCACCGCCATCATGCTCTC
GCCGCTCATGCTGCCGGCGATCCTCACCGGCCTTGCCCTGTTCCAGACCTATGTGCTGATGGACGTGGGCCGCCCGCTCT
GGGGGCTGGTGGTGGGCCACTGCCTCGTCACGGTGCCTTACGTGGTGCGCACCACTTTGGCGGTGCTGCACAATTTCGAC
CTGCGGCTGGAAGAGGCGGCGCGCAACCTCGGCGCCAGCCCGCAGCGGACCTTCTTCGAGGTGACGCTGCCGCTCATCAA
ACCGGGCGTGATCGCCGGCGGCATCTTCGCCTTCATCGTCTCCTTCGACCAGTTTCCGGTGTCGCTGTTCCTCGTCACGC
CGGGACAGGAGACGCTGCCCATCACGCTGTTCAACTATCTGAAATACGACCTCGACGGCACGATTGGTGCCGCGTCCGTG
GTCTCCATCCTCCTCGCCGCGCTGGTCGTCATCGGCCTCGACCGCACGGTGGGTCTCCGCTCCTACGTCAAGCTCTGA

Upstream 100 bases:

>100_bases
CGGCATGGTGCTGCTCACCCTCTCGCTGATCCTCGTGTTCGCCTACAACCACATTCTCGCGGCCGTCAGCGGCCAGCGGG
ACCTTGCGTGAGGCCCGGCC

Downstream 100 bases:

>100_bases
AAACAAACACCTTCCAGACGGGAAACCCAGCCATGACCGAGCACAGGACGTCCCTCAGCCGCCGTCAGTTCCTCGCCGCC
GGCGCCGCTCTCGGGGCGGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MLSLKIGRFLYLAANWAVLAFLLLPIAIIFVFALNPTPYIEFPPVGISLKWFDKFFASSQFMSALALSLEVAALTTIAAT
VLGASAALGIARGNVPGSRFITAIMLSPLMLPAILTGLALFQTYVLMDVGRPLWGLVVGHCLVTVPYVVRTTLAVLHNFD
LRLEEAARNLGASPQRTFFEVTLPLIKPGVIAGGIFAFIVSFDQFPVSLFLVTPGQETLPITLFNYLKYDLDGTIGAASV
VSILLAALVVIGLDRTVGLRSYVKL

Sequences:

>Translated_265_residues
MLSLKIGRFLYLAANWAVLAFLLLPIAIIFVFALNPTPYIEFPPVGISLKWFDKFFASSQFMSALALSLEVAALTTIAAT
VLGASAALGIARGNVPGSRFITAIMLSPLMLPAILTGLALFQTYVLMDVGRPLWGLVVGHCLVTVPYVVRTTLAVLHNFD
LRLEEAARNLGASPQRTFFEVTLPLIKPGVIAGGIFAFIVSFDQFPVSLFLVTPGQETLPITLFNYLKYDLDGTIGAASV
VSILLAALVVIGLDRTVGLRSYVKL
>Mature_265_residues
MLSLKIGRFLYLAANWAVLAFLLLPIAIIFVFALNPTPYIEFPPVGISLKWFDKFFASSQFMSALALSLEVAALTTIAAT
VLGASAALGIARGNVPGSRFITAIMLSPLMLPAILTGLALFQTYVLMDVGRPLWGLVVGHCLVTVPYVVRTTLAVLHNFD
LRLEEAARNLGASPQRTFFEVTLPLIKPGVIAGGIFAFIVSFDQFPVSLFLVTPGQETLPITLFNYLKYDLDGTIGAASV
VSILLAALVVIGLDRTVGLRSYVKL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=234, Percent_Identity=38.4615384615385, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787368, Length=224, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787081, Length=239, Percent_Identity=30.1255230125523, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1786980, Length=117, Percent_Identity=36.7521367521368, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788764, Length=164, Percent_Identity=28.6585365853659, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28548; Mature: 28548

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLKIGRFLYLAANWAVLAFLLLPIAIIFVFALNPTPYIEFPPVGISLKWFDKFFASSQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEHHHHHHHHHHHH
FMSALALSLEVAALTTIAATVLGASAALGIARGNVPGSRFITAIMLSPLMLPAILTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FQTYVLMDVGRPLWGLVVGHCLVTVPYVVRTTLAVLHNFDLRLEEAARNLGASPQRTFFE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHE
VTLPLIKPGVIAGGIFAFIVSFDQFPVSLFLVTPGQETLPITLFNYLKYDLDGTIGAASV
EEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
VSILLAALVVIGLDRTVGLRSYVKL
HHHHHHHHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure
MLSLKIGRFLYLAANWAVLAFLLLPIAIIFVFALNPTPYIEFPPVGISLKWFDKFFASSQ
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEHHHHHHHHHHHH
FMSALALSLEVAALTTIAATVLGASAALGIARGNVPGSRFITAIMLSPLMLPAILTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FQTYVLMDVGRPLWGLVVGHCLVTVPYVVRTTLAVLHNFDLRLEEAARNLGASPQRTFFE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCHHE
VTLPLIKPGVIAGGIFAFIVSFDQFPVSLFLVTPGQETLPITLFNYLKYDLDGTIGAASV
EEHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
VSILLAALVVIGLDRTVGLRSYVKL
HHHHHHHHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]