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The map label for this gene is yliC [C]

Identifier: 158424321

GI number: 158424321

Start: 3056833

End: 3057780

Strand: Reverse

Name: yliC [C]

Synonym: AZC_2697

Alternate gene names: 158424321

Gene position: 3057780-3056833 (Counterclockwise)

Preceding gene: 158424322

Following gene: 158424320

Centisome position: 56.94

GC content: 67.51

Gene sequence:

>948_bases
ATGCTGGCTTTCGCCGTGCGACGCTTTCTCGGGCTGGTGCTGACGCTGGCAGTCATGTCGGCGGCCATCTTCCTCATCAT
GGATGTACTGCCGGGCGATCCGGCGGCCATTCAGCTCGGGACCTCCGCGCGGCCCGATACGCTAGCGGCCCTGCGCCAGA
GCATGGGGCTCGATCAGCCGGCCGTGGTGCGTTACCTCGCCTGGATGGTCGGCATGGCCCGTGGCGATTTCGGCACCTCC
TTTACCTATGGCGTGCCGGTGGCCGGTCTCATCGCAGAGCGGCTGGCGGTGACGGTGCCCTTGGCGCTGATGGCCATCGC
GTTCTCCACCCTCATCGCGCTGCCGCTGGGCGTGATCGCGGCGGCGCGCAGCGGCTCGGCGGTGGATTATGGCGCGAGCC
TGTTTGCGCAGGTGTGCGTAGCGGTGCCGAATTTCTGGATCGGCCTTCTGCTCATCCTGCTCTTCTCCACGCAGCTCGGC
TGGTTCCCCGCCGGCGGCTTTCCCGGCTGGAGCGCGGGCATAGGAGCCGGCTTAAAGGCGCTGCTCCTGCCGGCCATTGC
TCTGGCGCTTCCGCAGTCCGCCATCCTTGCCCGCGTCACCCGCTCCGCCGTGCTCGATGTGCTGAATGAGGATTTCGTCG
CCACCGCCCGCGCCAAAGGTCTCACCCGCCGGGCGGCGCTGTGGCGGCATGTGGTGCCCAATGCACTGGTGCCAGTGGTG
ACGATCCTCGGCCTGCAATTCTCTTTCCTCATCGCCGGGGCGGTGCTGGTGGAGAATGTGTTCGTGCTCCCCGGCCTCGG
GCGGCTCGCCTTTCAGGCCCTCGCCCAGCGAGACCTGCTGGTGATCCGCGATGTGGTGCTCTTGTTCGCCGGGCTCGTGG
TGGTGGTGAACTTTCTCGTGGACATGGCCTATCTCGCCCTCGATCCGCGCCTCCGGGGGCGGGGATGA

Upstream 100 bases:

>100_bases
AGGGCATGTGGGAGAGCGAGCCCGTGCCCTCCAATGACCTGACCGAGGTGCGCTGGCGTGACTGAGCCCGGCCCGGTGCA
CGCGAGCTGAGGCGCGCTCC

Downstream 100 bases:

>100_bases
GCGCGCCTCTCCTGCGTCGGATCGCCGGGCGGATGCAGCTTCTGGTGGGCGCCGTTCTCACCGCTGCCATCGTCGGCATT
GCCATCCTCTCCCAATTCTG

Product: peptide/opine/nickel uptake ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MLAFAVRRFLGLVLTLAVMSAAIFLIMDVLPGDPAAIQLGTSARPDTLAALRQSMGLDQPAVVRYLAWMVGMARGDFGTS
FTYGVPVAGLIAERLAVTVPLALMAIAFSTLIALPLGVIAAARSGSAVDYGASLFAQVCVAVPNFWIGLLLILLFSTQLG
WFPAGGFPGWSAGIGAGLKALLLPAIALALPQSAILARVTRSAVLDVLNEDFVATARAKGLTRRAALWRHVVPNALVPVV
TILGLQFSFLIAGAVLVENVFVLPGLGRLAFQALAQRDLLVIRDVVLLFAGLVVVVNFLVDMAYLALDPRLRGRG

Sequences:

>Translated_315_residues
MLAFAVRRFLGLVLTLAVMSAAIFLIMDVLPGDPAAIQLGTSARPDTLAALRQSMGLDQPAVVRYLAWMVGMARGDFGTS
FTYGVPVAGLIAERLAVTVPLALMAIAFSTLIALPLGVIAAARSGSAVDYGASLFAQVCVAVPNFWIGLLLILLFSTQLG
WFPAGGFPGWSAGIGAGLKALLLPAIALALPQSAILARVTRSAVLDVLNEDFVATARAKGLTRRAALWRHVVPNALVPVV
TILGLQFSFLIAGAVLVENVFVLPGLGRLAFQALAQRDLLVIRDVVLLFAGLVVVVNFLVDMAYLALDPRLRGRG
>Mature_315_residues
MLAFAVRRFLGLVLTLAVMSAAIFLIMDVLPGDPAAIQLGTSARPDTLAALRQSMGLDQPAVVRYLAWMVGMARGDFGTS
FTYGVPVAGLIAERLAVTVPLALMAIAFSTLIALPLGVIAAARSGSAVDYGASLFAQVCVAVPNFWIGLLLILLFSTQLG
WFPAGGFPGWSAGIGAGLKALLLPAIALALPQSAILARVTRSAVLDVLNEDFVATARAKGLTRRAALWRHVVPNALVPVV
TILGLQFSFLIAGAVLVENVFVLPGLGRLAFQALAQRDLLVIRDVVLLFAGLVVVVNFLVDMAYLALDPRLRGRG

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=314, Percent_Identity=36.9426751592357, Blast_Score=213, Evalue=9e-57,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=36.5781710914454, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=37.1428571428571, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787497, Length=313, Percent_Identity=32.9073482428115, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787761, Length=337, Percent_Identity=35.0148367952522, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1788504, Length=363, Percent_Identity=28.3746556473829, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787550, Length=261, Percent_Identity=31.0344827586207, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33124; Mature: 33124

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFAVRRFLGLVLTLAVMSAAIFLIMDVLPGDPAAIQLGTSARPDTLAALRQSMGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCH
AVVRYLAWMVGMARGDFGTSFTYGVPVAGLIAERLAVTVPLALMAIAFSTLIALPLGVIA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARSGSAVDYGASLFAQVCVAVPNFWIGLLLILLFSTQLGWFPAGGFPGWSAGIGAGLKA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LLLPAIALALPQSAILARVTRSAVLDVLNEDFVATARAKGLTRRAALWRHVVPNALVPVV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TILGLQFSFLIAGAVLVENVFVLPGLGRLAFQALAQRDLLVIRDVVLLFAGLVVVVNFLV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMAYLALDPRLRGRG
HHHHHHHCCCCCCCC
>Mature Secondary Structure
MLAFAVRRFLGLVLTLAVMSAAIFLIMDVLPGDPAAIQLGTSARPDTLAALRQSMGLDQP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCCH
AVVRYLAWMVGMARGDFGTSFTYGVPVAGLIAERLAVTVPLALMAIAFSTLIALPLGVIA
HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AARSGSAVDYGASLFAQVCVAVPNFWIGLLLILLFSTQLGWFPAGGFPGWSAGIGAGLKA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
LLLPAIALALPQSAILARVTRSAVLDVLNEDFVATARAKGLTRRAALWRHVVPNALVPVV
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
TILGLQFSFLIAGAVLVENVFVLPGLGRLAFQALAQRDLLVIRDVVLLFAGLVVVVNFLV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DMAYLALDPRLRGRG
HHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]