| Definition | Azorhizobium caulinodans ORS 571, complete genome. |
|---|---|
| Accession | NC_009937 |
| Length | 5,369,772 |
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The map label for this gene is tgt [H]
Identifier: 158423931
GI number: 158423931
Start: 2631629
End: 2632765
Strand: Reverse
Name: tgt [H]
Synonym: AZC_2307
Alternate gene names: 158423931
Gene position: 2632765-2631629 (Counterclockwise)
Preceding gene: 158423932
Following gene: 158423930
Centisome position: 49.03
GC content: 67.11
Gene sequence:
>1137_bases ATGACCGACACCTTCTCCTTCAAGGTCCACGCGACCGACGGCACCGCCCGCACGGGCGCCATTTCCACGCCGCGCGGCGA GATCCGCACGCCCGCCTTCATGCCGGTCGGCACAGTGGCCACCGTCAAGGGCATCTATCCCGAACAGGTGCGGGCCACCG GCGCCGACATCCTGCTGGGTAACACCTATCACCTGATGCTGCGCCCGAGCGCGGAGCGGGTGGCCAAGCTCGGCGGGCTG CATAAATTCATGCGCTGGGAGCGGCCGATCCTCACCGATTCCGGCGGTTTCCAGGTCATGTCCCTGTCCGGCCTGCGCAA AATCACCGAGAAGGGCGTCACCTTCCGTTCGCACGTGGACGGCGCGCTGCACGAGATGACCCCGGAGCGCTCCATCGAGA TCCAGGGCCTGCTCGGCGCTGACATCCAGATGCAGCTCGATGAATGCGTCAGCCTGCCCTGCGAGGAAGCCGAGGCCGAG CGCGCCATGCGCCTGTCGCTGCGCTGGGCGGAGCGCTCGAAGAAGGCGTTCGAGCTTCAGCCCAAGGGGCGGGCGCTGTA CGGCATCGTGCAGGGCGGGGCGGTGCCGCGCCTGCGCATCGAATCCGCCCGCGAGCTCGCGGCTATGGACTTCCCCGGCT ATTCCATCGGCGGCCTCGCGGTCGGCGAGCCGCAAGAGGTCATGCTGGACATGATCGAGACGGTCGAGCCGCACCTGCCC AAGGAAAAGCCCCGCTATCTCATGGGGGTCGGCACGCCAGACGACATGCTGGAGGCCGTGGCGCGGGGCATCGACATGTT CGACTGCGTGATGCCCACCCGCTCGGGCCGCCATGCGCTGGCCTTCACCCGCTTCGGCCGTATCAACCTCAAGAATGCCC GCCATGCGGAAGATTCCCGCCCGCTCGACGAAGAGAGTGATTGCCCGGCGCTGCGGGATTATTCCCGGGCCTATCTCCAC CACCTTGTGCGCTGCGAGGAGATGCTGGGGGCCATGCTGATCTCCTGGGCGAACCTCCATTATTACCAGGACCTCATGCG CGGCATCCGCGGGGCCATCGCCGAAGGGCGGTTCGAGGATTTCCGCAGGGAGACGAAGGAAGGCTGGGCGCGCGGCGATA TTCCACGCCTGGCCTGA
Upstream 100 bases:
>100_bases CTTCTATTCCTACGGCGACGCCTGCCTACTGGAACGGTGAGGTTGCCATACGTGCGGCGCGCTTTTCATTCGGGCCGGCC CGTGCTCTAGAGCAGCCGAA
Downstream 100 bases:
>100_bases ATCGGAAATATTCCTAGAACGAAAATTAGTTTCTTCGTAAGGTGCGTTGCCTGAGCGCAGGGGAGGGGCGCGCCTTTTGG GGTTGCACCGTTCCGCCTTG
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MTDTFSFKVHATDGTARTGAISTPRGEIRTPAFMPVGTVATVKGIYPEQVRATGADILLGNTYHLMLRPSAERVAKLGGL HKFMRWERPILTDSGGFQVMSLSGLRKITEKGVTFRSHVDGALHEMTPERSIEIQGLLGADIQMQLDECVSLPCEEAEAE RAMRLSLRWAERSKKAFELQPKGRALYGIVQGGAVPRLRIESARELAAMDFPGYSIGGLAVGEPQEVMLDMIETVEPHLP KEKPRYLMGVGTPDDMLEAVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHAEDSRPLDEESDCPALRDYSRAYLH HLVRCEEMLGAMLISWANLHYYQDLMRGIRGAIAEGRFEDFRRETKEGWARGDIPRLA
Sequences:
>Translated_378_residues MTDTFSFKVHATDGTARTGAISTPRGEIRTPAFMPVGTVATVKGIYPEQVRATGADILLGNTYHLMLRPSAERVAKLGGL HKFMRWERPILTDSGGFQVMSLSGLRKITEKGVTFRSHVDGALHEMTPERSIEIQGLLGADIQMQLDECVSLPCEEAEAE RAMRLSLRWAERSKKAFELQPKGRALYGIVQGGAVPRLRIESARELAAMDFPGYSIGGLAVGEPQEVMLDMIETVEPHLP KEKPRYLMGVGTPDDMLEAVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHAEDSRPLDEESDCPALRDYSRAYLH HLVRCEEMLGAMLISWANLHYYQDLMRGIRGAIAEGRFEDFRRETKEGWARGDIPRLA >Mature_377_residues TDTFSFKVHATDGTARTGAISTPRGEIRTPAFMPVGTVATVKGIYPEQVRATGADILLGNTYHLMLRPSAERVAKLGGLH KFMRWERPILTDSGGFQVMSLSGLRKITEKGVTFRSHVDGALHEMTPERSIEIQGLLGADIQMQLDECVSLPCEEAEAER AMRLSLRWAERSKKAFELQPKGRALYGIVQGGAVPRLRIESARELAAMDFPGYSIGGLAVGEPQEVMLDMIETVEPHLPK EKPRYLMGVGTPDDMLEAVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHAEDSRPLDEESDCPALRDYSRAYLHH LVRCEEMLGAMLISWANLHYYQDLMRGIRGAIAEGRFEDFRRETKEGWARGDIPRLA
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=349, Percent_Identity=44.6991404011461, Blast_Score=302, Evalue=3e-82, Organism=Homo sapiens, GI13375872, Length=307, Percent_Identity=27.0358306188925, Blast_Score=98, Evalue=1e-20, Organism=Escherichia coli, GI1786607, Length=356, Percent_Identity=53.3707865168539, Blast_Score=385, Evalue=1e-108, Organism=Caenorhabditis elegans, GI17544680, Length=359, Percent_Identity=43.4540389972145, Blast_Score=281, Evalue=4e-76, Organism=Drosophila melanogaster, GI19920510, Length=358, Percent_Identity=44.1340782122905, Blast_Score=299, Evalue=2e-81, Organism=Drosophila melanogaster, GI21355311, Length=171, Percent_Identity=28.6549707602339, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 42214; Mature: 42083
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 4.5 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDTFSFKVHATDGTARTGAISTPRGEIRTPAFMPVGTVATVKGIYPEQVRATGADILLG CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEEC NTYHLMLRPSAERVAKLGGLHKFMRWERPILTDSGGFQVMSLSGLRKITEKGVTFRSHVD CEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHCCCEEHHHHC GALHEMTPERSIEIQGLLGADIQMQLDECVSLPCEEAEAERAMRLSLRWAERSKKAFELQ HHHHHCCCCCCEEEEEEECCCHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC PKGRALYGIVQGGAVPRLRIESARELAAMDFPGYSIGGLAVGEPQEVMLDMIETVEPHLP CCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCCCCC KEKPRYLMGVGTPDDMLEAVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHAEDSR CCCCCEEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEECCCEECCCCCCCCCCC PLDEESDCPALRDYSRAYLHHLVRCEEMLGAMLISWANLHYYQDLMRGIRGAIAEGRFED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH FRRETKEGWARGDIPRLA HHHHHHHCCCCCCCCCCC >Mature Secondary Structure TDTFSFKVHATDGTARTGAISTPRGEIRTPAFMPVGTVATVKGIYPEQVRATGADILLG CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEEC NTYHLMLRPSAERVAKLGGLHKFMRWERPILTDSGGFQVMSLSGLRKITEKGVTFRSHVD CEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCCCEEEEEHHHHHHHHHCCCEEHHHHC GALHEMTPERSIEIQGLLGADIQMQLDECVSLPCEEAEAERAMRLSLRWAERSKKAFELQ HHHHHCCCCCCEEEEEEECCCHHEEHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEC PKGRALYGIVQGGAVPRLRIESARELAAMDFPGYSIGGLAVGEPQEVMLDMIETVEPHLP CCCCEEEEEECCCCCCEEEHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHCCCCC KEKPRYLMGVGTPDDMLEAVARGIDMFDCVMPTRSGRHALAFTRFGRINLKNARHAEDSR CCCCCEEEECCCCHHHHHHHHCCCCHHHHHCCCCCCCEEEEEEECCCEECCCCCCCCCCC PLDEESDCPALRDYSRAYLHHLVRCEEMLGAMLISWANLHYYQDLMRGIRGAIAEGRFED CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH FRRETKEGWARGDIPRLA HHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]