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The map label for this gene is ihfA

Identifier: 158423917

GI number: 158423917

Start: 2619175

End: 2619492

Strand: Reverse

Name: ihfA

Synonym: AZC_2293

Alternate gene names: 158423917

Gene position: 2619492-2619175 (Counterclockwise)

Preceding gene: 158423918

Following gene: 158423916

Centisome position: 48.78

GC content: 63.52

Gene sequence:

>318_bases
ATGGCTGGACGCACGATAACGCGCGCCGATTTGTGTGAGGCGGTCTACCAGCAGGTGGGCCTGTCTCGCACGGAGTCCGC
CGCGCTTGTGGAAATGGTGCTGCGGGAGATCGCGGACTGCCTGGCCAAGGGGGAAACGGTCAAGCTGTCCTCGTTCGGGT
CCTTTGTCGTGCGGGACAAGGGCCAGCGGGTGGGGCGCAATCCGAAGACCGGCGAGGAAGTGCCGATCGAGCCCCGCCGG
GTCATGGTTTTCAAGCCGTCCAGCATCTTGAAGAATCGCATCAACGGGCGCACTGGAAAGGCGGCTGGACGCGAATAA

Upstream 100 bases:

>100_bases
TGTTCCTGACGCAAATAAAGCGTTAAGAACATTGACCTTGCTGCGGTCCACTGGCTAGGGTCGCGGCAGTGGGGGTGTCC
TCGAGGGGTCGGGAAGACAC

Downstream 100 bases:

>100_bases
GGAGCCGCGAGGCACGTGGTTGAGGCGAGGCATCCCGACAAAGCCCCGGACGCCTTCCGCACCATCAGCGAGGTGGCAGA
CGAACTTGAGCTGCCGCAGC

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MAGRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQRVGRNPKTGEEVPIEPRR
VMVFKPSSILKNRINGRTGKAAGRE

Sequences:

>Translated_105_residues
MAGRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQRVGRNPKTGEEVPIEPRR
VMVFKPSSILKNRINGRTGKAAGRE
>Mature_104_residues
AGRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQRVGRNPKTGEEVPIEPRRV
MVFKPSSILKNRINGRTGKAAGRE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=95, Percent_Identity=47.3684210526316, Blast_Score=99, Evalue=6e-23,
Organism=Escherichia coli, GI1787141, Length=92, Percent_Identity=39.1304347826087, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=32.5842696629214, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=26.6666666666667, Blast_Score=59, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_AZOC5 (A8I5K8)

Other databases:

- EMBL:   AP009384
- RefSeq:   YP_001525209.1
- ProteinModelPortal:   A8I5K8
- SMR:   A8I5K8
- GeneID:   5689388
- GenomeReviews:   AP009384_GR
- KEGG:   azc:AZC_2293
- HOGENOM:   HBG705085
- OMA:   VRGETVK
- ProtClustDB:   PRK00285
- BioCyc:   ACAU438753:AZC_2293-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11491; Mature: 11360

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDK
CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCC
GQRVGRNPKTGEEVPIEPRRVMVFKPSSILKNRINGRTGKAAGRE
CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AGRTITRADLCEAVYQQVGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDK
CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEECCC
GQRVGRNPKTGEEVPIEPRRVMVFKPSSILKNRINGRTGKAAGRE
CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA