Click here to switch to the map view.

The map label for this gene is yliC [C]

Identifier: 158423638

GI number: 158423638

Start: 2322516

End: 2323457

Strand: Reverse

Name: yliC [C]

Synonym: AZC_2014

Alternate gene names: 158423638

Gene position: 2323457-2322516 (Counterclockwise)

Preceding gene: 158423639

Following gene: 158423637

Centisome position: 43.27

GC content: 65.29

Gene sequence:

>942_bases
ATGCTCGGTTACATCCTGCGGCGCACGCTCTCGACCATCCCCGTCATGGCGATGGTCGGGCTGTTCGTGTTCAGCCTGCT
CTACATCGCACCCGGCGATCCCGCCGCGGTGATCGCCGGCGACCAGGCGTCGCCGGCGGACATCGCCCGCATCCGCGCCA
ACCTCGGTCTCGACCGGCCCTTCCTCGTGCAGTTCGGCGAATGGGCGTGGCGCACGCTGCATGCGGACCTCGGAACTTCC
ATCTTCACCAACCTGCCGGTTACGCAGATGATCGGCCAGCGCATCGAGCCCACGGTCTCGCTGATGCTGGTGACGCTCAT
CTTCGCCATCATCATCGCCGTCCCCATGGGCGTCGTGGCGGCCTGGAAGGCGGGCACGTGGGTGGACCGGGCGATCATGA
CCTTCGCGGTGCTCGGGTTCTCGGTGCCCGTCTTCGTCATCGGCTATGTGCTGGCCTACACCTTCGCGCTCCAGCTCGAC
TGGTTTCCCGTGCAGGGCTATACGCCCATCGCGGAGGGCATCGGGCCGTGGCTCTCCAATCTGGTGCTGCCGGCCATCTC
GCTCGGCTGCGTCTACATCGCGCTCATCGCCCGCATCACCCGCGCTTCCATGCTGGAGGTGCTGGCGCAGGATTATGTGC
GTACGGCGAAGGCCAAGGGCCTTGGACAGGGCGGCGTGCTTTTCATCCACGCGCTCAAGAATGCAGCGGTGCCCATCGTC
ACCGTCATCGGCATCGGCATCGCGCTGCTCATCGGCGGCGCGGTGGTGACGGAGAGCGTCTTCGCCATCCCGGGCCTCGG
GCGCCTCACGGTGGATGCCATCCTGCGCCGCGATTATCCGGTCATCCAGGGCGTCGTGCTGCTGTTCAGCTTCGTCTACG
TCCTCGTGAACCTGATCATCGACATCCTCTACACCTTCCTTGATCCGAGGATCCGCTATTGA

Upstream 100 bases:

>100_bases
CACCTATACGGCGTGGAACAAGAAGGTGACGGGCGTGACCAAGGGCCCGATCCCGACCTTCTGGGGCGTCGCAAAGTCCG
CCTGACGGGTAAGGGAACGC

Downstream 100 bases:

>100_bases
GCCTCGCCAATGATCATCCGGGCGCGGCCCCGCCGGAAGGCCTCGCCATCGCCACCGAACTGCCGGACATCCTCAAGGCG
CGCAAGCCGCGCACGGGGTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MLGYILRRTLSTIPVMAMVGLFVFSLLYIAPGDPAAVIAGDQASPADIARIRANLGLDRPFLVQFGEWAWRTLHADLGTS
IFTNLPVTQMIGQRIEPTVSLMLVTLIFAIIIAVPMGVVAAWKAGTWVDRAIMTFAVLGFSVPVFVIGYVLAYTFALQLD
WFPVQGYTPIAEGIGPWLSNLVLPAISLGCVYIALIARITRASMLEVLAQDYVRTAKAKGLGQGGVLFIHALKNAAVPIV
TVIGIGIALLIGGAVVTESVFAIPGLGRLTVDAILRRDYPVIQGVVLLFSFVYVLVNLIIDILYTFLDPRIRY

Sequences:

>Translated_313_residues
MLGYILRRTLSTIPVMAMVGLFVFSLLYIAPGDPAAVIAGDQASPADIARIRANLGLDRPFLVQFGEWAWRTLHADLGTS
IFTNLPVTQMIGQRIEPTVSLMLVTLIFAIIIAVPMGVVAAWKAGTWVDRAIMTFAVLGFSVPVFVIGYVLAYTFALQLD
WFPVQGYTPIAEGIGPWLSNLVLPAISLGCVYIALIARITRASMLEVLAQDYVRTAKAKGLGQGGVLFIHALKNAAVPIV
TVIGIGIALLIGGAVVTESVFAIPGLGRLTVDAILRRDYPVIQGVVLLFSFVYVLVNLIIDILYTFLDPRIRY
>Mature_313_residues
MLGYILRRTLSTIPVMAMVGLFVFSLLYIAPGDPAAVIAGDQASPADIARIRANLGLDRPFLVQFGEWAWRTLHADLGTS
IFTNLPVTQMIGQRIEPTVSLMLVTLIFAIIIAVPMGVVAAWKAGTWVDRAIMTFAVLGFSVPVFVIGYVLAYTFALQLD
WFPVQGYTPIAEGIGPWLSNLVLPAISLGCVYIALIARITRASMLEVLAQDYVRTAKAKGLGQGGVLFIHALKNAAVPIV
TVIGIGIALLIGGAVVTESVFAIPGLGRLTVDAILRRDYPVIQGVVLLFSFVYVLVNLIIDILYTFLDPRIRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=40.8945686900958, Blast_Score=253, Evalue=9e-69,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=39.7626112759644, Blast_Score=244, Evalue=6e-66,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=38.4126984126984, Blast_Score=214, Evalue=8e-57,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=34.6031746031746, Blast_Score=191, Evalue=7e-50,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=37.7300613496933, Blast_Score=172, Evalue=2e-44,
Organism=Escherichia coli, GI1787550, Length=260, Percent_Identity=30.7692307692308, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=26.0387811634349, Blast_Score=130, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33874; Mature: 33874

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGYILRRTLSTIPVMAMVGLFVFSLLYIAPGDPAAVIAGDQASPADIARIRANLGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
FLVQFGEWAWRTLHADLGTSIFTNLPVTQMIGQRIEPTVSLMLVTLIFAIIIAVPMGVVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKAGTWVDRAIMTFAVLGFSVPVFVIGYVLAYTFALQLDWFPVQGYTPIAEGIGPWLSN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHH
LVLPAISLGCVYIALIARITRASMLEVLAQDYVRTAKAKGLGQGGVLFIHALKNAAVPIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHCCCHHHH
TVIGIGIALLIGGAVVTESVFAIPGLGRLTVDAILRRDYPVIQGVVLLFSFVYVLVNLII
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DILYTFLDPRIRY
HHHHHHHCCCCCC
>Mature Secondary Structure
MLGYILRRTLSTIPVMAMVGLFVFSLLYIAPGDPAAVIAGDQASPADIARIRANLGLDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCH
FLVQFGEWAWRTLHADLGTSIFTNLPVTQMIGQRIEPTVSLMLVTLIFAIIIAVPMGVVA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AWKAGTWVDRAIMTFAVLGFSVPVFVIGYVLAYTFALQLDWFPVQGYTPIAEGIGPWLSN
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHH
LVLPAISLGCVYIALIARITRASMLEVLAQDYVRTAKAKGLGQGGVLFIHALKNAAVPIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHCCCHHHH
TVIGIGIALLIGGAVVTESVFAIPGLGRLTVDAILRRDYPVIQGVVLLFSFVYVLVNLII
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DILYTFLDPRIRY
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]