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The map label for this gene is araC [H]

Identifier: 158422951

GI number: 158422951

Start: 1486934

End: 1487884

Strand: Reverse

Name: araC [H]

Synonym: AZC_1327

Alternate gene names: 158422951

Gene position: 1487884-1486934 (Counterclockwise)

Preceding gene: 158422958

Following gene: 158422950

Centisome position: 27.71

GC content: 69.4

Gene sequence:

>951_bases
ATGGCCGGCCGTTATGATCCCGCATGGTTCACCACCGCCGGCCTGCCGCCACGGCGGGGGCAGGACGCGGCCGTCAAGCT
GTTCGCAGATCTTCTGGGAGACGTGAGCCTGCATTTCGGCGCGGCGAACGGCAGACCGGCGCGCATCGTCCATTGCGCCC
TGCCGGACATCCTCATCACCACATGCGTGGACGTGCGCGCCGTCATCCGGTCGGAGCGGGGGATGGTGCCTTCCGATATC
ATCCTCGTCCGTCCCGTCGGCGGCCGGATCGGCCTGCGCCAGGCCGGACGGGAGATATGGCTGGAGGAGCGCAGTGCGGC
CCTCGTCGCGCTCGGACACCCCTTTGAACTCGATGCCACGCGGGCCGAACGGTTCGACTTCCTGCGCATGGCGGCGCCCG
TCGCCGCCCATGCGGAAGCCCTGCATGGGCGGATCGCCAAGCCGGCGCCGGCTTCGGACAACCGGCTCATGCTCCTGACC
CATTATGCCGGCGCCGTGCTCCAGGGGATGATTCCGCTTGATTCCGAGCGGCATGCGCGGCTCGCGGGCAATCACCTGCG
CGATCTGGCGGGAACGCTCTTCGGGCTGGACGACCCCGCGCAAGGAGCCCTGAGCCCGGCCGTCCGGCTCGCCGCGATCC
GCTATCAGGTGGATCGGGACTATGCCCGGCGAGACCTGTCCGTGGAGAGCGTCGCCCGGCTGCACGGTGTCACGGGCCGC
TATGTGCAGAAGCTGTTCGCGCAGGAGGGCACGACCTTCTCCCGCTATCTGCTCGAGCGGCGGCTCGCCGCTGCCCATGC
CCTCCTGACCAGCGAGGAGGGGCCTCGCGCGCGCATCGCGACAGTCGCGCTGGAGGCGGGTTTCGGCGACCTCTCCTATT
TCGTGCGCACCTTCCGGACCCGCTACGGCGCGCCGCCCTCCCACATCTCCAAACGCGAAAGGCCGAAGTAA

Upstream 100 bases:

>100_bases
GTTGAAAGCGAAACCGAACATGGTCTAAAGCGAACTCGACCTCTTTCATTTCGCCTGTCTCCGAGGCGCAACAACTTGGA
ATTATTCAACGGAAGCGAGC

Downstream 100 bases:

>100_bases
CCGCCTCGCCCTTGTCCGAACGGCTGCGCCAGCCAGAAACTGTCTGATAGCGCCTGCGGTGCGAAGGGCGTTTCCGCCAA
ACAAGCCGACGTTCACTTGA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAGRYDPAWFTTAGLPPRRGQDAAVKLFADLLGDVSLHFGAANGRPARIVHCALPDILITTCVDVRAVIRSERGMVPSDI
ILVRPVGGRIGLRQAGREIWLEERSAALVALGHPFELDATRAERFDFLRMAAPVAAHAEALHGRIAKPAPASDNRLMLLT
HYAGAVLQGMIPLDSERHARLAGNHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGR
YVQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRTRYGAPPSHISKRERPK

Sequences:

>Translated_316_residues
MAGRYDPAWFTTAGLPPRRGQDAAVKLFADLLGDVSLHFGAANGRPARIVHCALPDILITTCVDVRAVIRSERGMVPSDI
ILVRPVGGRIGLRQAGREIWLEERSAALVALGHPFELDATRAERFDFLRMAAPVAAHAEALHGRIAKPAPASDNRLMLLT
HYAGAVLQGMIPLDSERHARLAGNHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGR
YVQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRTRYGAPPSHISKRERPK
>Mature_315_residues
AGRYDPAWFTTAGLPPRRGQDAAVKLFADLLGDVSLHFGAANGRPARIVHCALPDILITTCVDVRAVIRSERGMVPSDII
LVRPVGGRIGLRQAGREIWLEERSAALVALGHPFELDATRAERFDFLRMAAPVAAHAEALHGRIAKPAPASDNRLMLLTH
YAGAVLQGMIPLDSERHARLAGNHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGRY
VQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRTRYGAPPSHISKRERPK

Specific function: Transcriptional activator of the rhizobactin regulon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34575; Mature: 34444

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGRYDPAWFTTAGLPPRRGQDAAVKLFADLLGDVSLHFGAANGRPARIVHCALPDILIT
CCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCEEEEECCHHHHHH
TCVDVRAVIRSERGMVPSDIILVRPVGGRIGLRQAGREIWLEERSAALVALGHPFELDAT
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCH
RAERFDFLRMAAPVAAHAEALHGRIAKPAPASDNRLMLLTHYAGAVLQGMIPLDSERHAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCHHH
LAGNHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHH
YVQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
RYGAPPSHISKRERPK
HCCCCHHHHCCCCCCC
>Mature Secondary Structure 
AGRYDPAWFTTAGLPPRRGQDAAVKLFADLLGDVSLHFGAANGRPARIVHCALPDILIT
CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCEEEEECCHHHHHH
TCVDVRAVIRSERGMVPSDIILVRPVGGRIGLRQAGREIWLEERSAALVALGHPFELDAT
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCH
RAERFDFLRMAAPVAAHAEALHGRIAKPAPASDNRLMLLTHYAGAVLQGMIPLDSERHAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCHHH
LAGNHLRDLAGTLFGLDDPAQGALSPAVRLAAIRYQVDRDYARRDLSVESVARLHGVTGR
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHH
YVQKLFAQEGTTFSRYLLERRLAAAHALLTSEEGPRARIATVALEAGFGDLSYFVRTFRT
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHH
RYGAPPSHISKRERPK
HCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11274118; 11481432 [H]