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The map label for this gene is ymdB [H]

Identifier: 158422133

GI number: 158422133

Start: 566519

End: 567319

Strand: Direct

Name: ymdB [H]

Synonym: AZC_0509

Alternate gene names: 158422133

Gene position: 566519-567319 (Clockwise)

Preceding gene: 158422132

Following gene: 158422134

Centisome position: 10.55

GC content: 70.79

Gene sequence:

>801_bases
GTGGTTGGCCGGACCGGCCGCGACGTGGTGACAAGCCGGTTGCCCGGTCTCGTTCAGGACTGGAAGCTCGATCTCGTCGT
GGTCAATGGCGAGAACGCCGCCGGCGGCTTCGGCATCACCGAGGCCATCTATAACGAGATCCGAACCGCCGGCGCCGACG
CGGTGACGCTCGGCAACCACGCTTTCGACCAGCGCGAGGCCCTGGTCTTCATCGAGCGGGCGGACGCGCTGGTGCGTCCC
ATCAACTATCCGCCCGGCACGCCGGGACGGGGCGCCGCCATGATCGAGACGCGCGGCGGGGCGCGGGTGCTGGTGGCGAA
CGTGATGGGCCGTGCCTTCATGGACCCGCTGGACGATCCCTTCGCCGCCATCGACCGGGCGCTGGACGGTGTGGACCTCG
GCCGGGTGGTGGACGCCATCGTGGTGGACTTCCACGCCGAGACCACCAGCGAGAAGCAGGCCTTCGGCCATTATTGCGAT
GGGCGGGTGAGCCTCGTGGTGGGCACCCACACGCATGTGCCCACCGCCGACCATCGCATCCTGCCCGGCGGCACGGCCTA
TCTGACGGACGCCGGCATGTGCGGGAGCTATGACGGCGTGATCGGCATGGACAAGGACGAGCCGCTGCGGCGCTTCACGC
GCAAGATCGGCGCCGGCCGCTTCGAGCCGGCGGCCGGTCCCGCCTCGCTCTGCGGCTTTGCGGTGGAGACGGACCCGGCC
ACCGGCCTCGCCGTGAAGGCGGCCCCGGTGCGCCTCGGCGGCGATCTCAGCGAGGCACGCCCGGCTTTCTGGGAGGCGTG
A

Upstream 100 bases:

>100_bases
GTTCCCGCTGAACCCCATGACGAACCGCTCGATGGGATGGTAACGGAAGCCGGTGTCCTTTTCCTTGGCGGGTCTGATGC
GGATTCTCTTTCTCGGTGAC

Downstream 100 bases:

>100_bases
TGCGGCGCGGCATGGGGCTTTCTTGCTCTTTGCCGCCTCCACGACCTATAAGGCGCGGCACAGTGGATTGGCATCACGCC
GGGCGGCGCTCGGTCGATTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MVGRTGRDVVTSRLPGLVQDWKLDLVVVNGENAAGGFGITEAIYNEIRTAGADAVTLGNHAFDQREALVFIERADALVRP
INYPPGTPGRGAAMIETRGGARVLVANVMGRAFMDPLDDPFAAIDRALDGVDLGRVVDAIVVDFHAETTSEKQAFGHYCD
GRVSLVVGTHTHVPTADHRILPGGTAYLTDAGMCGSYDGVIGMDKDEPLRRFTRKIGAGRFEPAAGPASLCGFAVETDPA
TGLAVKAAPVRLGGDLSEARPAFWEA

Sequences:

>Translated_266_residues
MVGRTGRDVVTSRLPGLVQDWKLDLVVVNGENAAGGFGITEAIYNEIRTAGADAVTLGNHAFDQREALVFIERADALVRP
INYPPGTPGRGAAMIETRGGARVLVANVMGRAFMDPLDDPFAAIDRALDGVDLGRVVDAIVVDFHAETTSEKQAFGHYCD
GRVSLVVGTHTHVPTADHRILPGGTAYLTDAGMCGSYDGVIGMDKDEPLRRFTRKIGAGRFEPAAGPASLCGFAVETDPA
TGLAVKAAPVRLGGDLSEARPAFWEA
>Mature_266_residues
MVGRTGRDVVTSRLPGLVQDWKLDLVVVNGENAAGGFGITEAIYNEIRTAGADAVTLGNHAFDQREALVFIERADALVRP
INYPPGTPGRGAAMIETRGGARVLVANVMGRAFMDPLDDPFAAIDRALDGVDLGRVVDAIVVDFHAETTSEKQAFGHYCD
GRVSLVVGTHTHVPTADHRILPGGTAYLTDAGMCGSYDGVIGMDKDEPLRRFTRKIGAGRFEPAAGPASLCGFAVETDPA
TGLAVKAAPVRLGGDLSEARPAFWEA

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28057; Mature: 28057

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGRTGRDVVTSRLPGLVQDWKLDLVVVNGENAAGGFGITEAIYNEIRTAGADAVTLGNH
CCCCCCHHHHHHHCCCCHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
AFDQREALVFIERADALVRPINYPPGTPGRGAAMIETRGGARVLVANVMGRAFMDPLDDP
CCCCCCEEEEEECCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCH
FAAIDRALDGVDLGRVVDAIVVDFHAETTSEKQAFGHYCDGRVSLVVGTHTHVPTADHRI
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCEE
LPGGTAYLTDAGMCGSYDGVIGMDKDEPLRRFTRKIGAGRFEPAAGPASLCGFAVETDPA
CCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHCEEEECCCC
TGLAVKAAPVRLGGDLSEARPAFWEA
CCEEEEECCEEECCCHHHCCCCCCCC
>Mature Secondary Structure
MVGRTGRDVVTSRLPGLVQDWKLDLVVVNGENAAGGFGITEAIYNEIRTAGADAVTLGNH
CCCCCCHHHHHHHCCCCHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC
AFDQREALVFIERADALVRPINYPPGTPGRGAAMIETRGGARVLVANVMGRAFMDPLDDP
CCCCCCEEEEEECCCHHHCCCCCCCCCCCCCEEEEEECCCCEEEHHHHHHHHHCCCCCCH
FAAIDRALDGVDLGRVVDAIVVDFHAETTSEKQAFGHYCDGRVSLVVGTHTHVPTADHRI
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCEE
LPGGTAYLTDAGMCGSYDGVIGMDKDEPLRRFTRKIGAGRFEPAAGPASLCGFAVETDPA
CCCCCEEEECCCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCHHHHHCEEEECCCC
TGLAVKAAPVRLGGDLSEARPAFWEA
CCEEEEECCEEECCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]