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The map label for this gene is omcA

Identifier: 15836089

GI number: 15836089

Start: 642349

End: 642621

Strand: Reverse

Name: omcA

Synonym: CPj0558

Alternate gene names: 15836089

Gene position: 642621-642349 (Counterclockwise)

Preceding gene: 15836091

Following gene: 15836088

Centisome position: 52.39

GC content: 41.39

Gene sequence:

>273_bases
ATGAAGAAAGCTGTTTTAATTGCTGCAATGTTTTGTGGAGTAGTTAGCTTAAGTAGCTGCTGCCGCATTGTAGATTGTTG
TTTTGAGGATCCTTGCGCACCCTCTTCTTGCAATCCTTGTGAAGTAATAAGAAAAAAAGAAAGATCTTGCGGCGGTAATG
CTTGTGGGTCCTACGTTCCTTCTTGTTCTAATCCATGTGGTTCAACAGAGTGTAACTCTCAAAGCCCACAAGTTAAAGGT
TGTACATCACCTGATGGCAGATGCAAACAGTAA

Upstream 100 bases:

>100_bases
GTTCATGGGAACGTGCTTTATTAATTATTAAAAGTTTTGTTGAATTTTCAGTAATAAATAAGACACGTAAGTTTTCTAAT
TAGAAAGGAGTTAAAAACTT

Downstream 100 bases:

>100_bases
GGAGAGTTCTCTTAACTGTTTACTTAAATTGATCAGGTAGTTAGGAGATGAATTAATTCCTGACTACCTTAATTCAGATA
ATAAACCCAAATGTTGAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: Small-CRP; 9 kDa cysteine-rich lipoprotein; 9KD-CRP

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MKKAVLIAAMFCGVVSLSSCCRIVDCCFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVPSCSNPCGSTECNSQSPQVKG
CTSPDGRCKQ

Sequences:

>Translated_90_residues
MKKAVLIAAMFCGVVSLSSCCRIVDCCFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVPSCSNPCGSTECNSQSPQVKG
CTSPDGRCKQ
>Mature_90_residues
MKKAVLIAAMFCGVVSLSSCCRIVDCCFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVPSCSNPCGSTECNSQSPQVKG
CTSPDGRCKQ

Specific function: In elementary bodies (EBs, the infectious stage, which is able to survive outside the host cell) provides the structural integrity of the outer envelope through disulfide cross-links with the large cysteine-rich periplasmic protein and the major outer mem

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential). Note=The protein moiety probably penetrates into the periplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMCA_CHLPN (Q9Z7Z5)

Other databases:

- EMBL:   X53511
- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A72064
- PIR:   B86560
- RefSeq:   NP_224754.1
- RefSeq:   NP_300613.1
- RefSeq:   NP_444744.1
- RefSeq:   NP_876852.1
- GeneID:   1467259
- GeneID:   895361
- GeneID:   919315
- GeneID:   963736
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0193
- KEGG:   cpn:CPn0558
- KEGG:   cpt:CpB0580
- TIGR:   CP_0193
- HOGENOM:   HBG414080
- OMA:   EDPCAPK
- ProtClustDB:   CLSK871384
- BioCyc:   CPNE115711:CP_0193-MONOMER
- BioCyc:   CPNE115713:CPN0558-MONOMER
- BioCyc:   CPNE138677:CPJ0558-MONOMER
- BioCyc:   CPNE182082:CPB0580-MONOMER
- InterPro:   IPR003517
- PRINTS:   PR01335
- ProDom:   PD009138

Pfam domain/function: PF03503 Chlam_OMP3

EC number: NA

Molecular weight: Translated: 9410; Mature: 9410

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

16.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
18.9 %Cys+Met (Translated Protein)
16.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
18.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAVLIAAMFCGVVSLSSCCRIVDCCFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
SCSNPCGSTECNSQSPQVKGCTSPDGRCKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKAVLIAAMFCGVVSLSSCCRIVDCCFEDPCAPSSCNPCEVIRKKERSCGGNACGSYVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
SCSNPCGSTECNSQSPQVKGCTSPDGRCKQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7582008; 10192388; 10684935; 10871362