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The map label for this gene is omcB

Identifier: 15836088

GI number: 15836088

Start: 640512

End: 642182

Strand: Reverse

Name: omcB

Synonym: CPj0557

Alternate gene names: 15836088

Gene position: 642182-640512 (Counterclockwise)

Preceding gene: 15836089

Following gene: 15836087

Centisome position: 52.36

GC content: 42.61

Gene sequence:

>1671_bases
ATGTCCAAACTCATCAGACGAGTAGTTACGGTCCTTGCGCTAACGAGTATGGCGAGTTGCTTTGCCAGCGGGGGTATAGA
GGCCGCTGTAGCAGAGTCTCTGATTACTAAGATCGTCGCTAGTGCGGAAACAAAGCCAGCACCTGTTCCTATGACAGCGA
AGAAGGTTAGACTTGTCCGTAGAAATAAACAACCAGTTGAACAAAAAAGCCGTGGTGCTTTTTGTGATAAAGAATTTTAT
CCCTGTGAAGAGGGACGATGTCAACCTGTAGAGGCTCAGCAAGAGTCTTGCTACGGAAGATTGTATTCTGTAAAAGTAAA
CGATGATTGCAACGTAGAAATTTGCCAGTCCGTTCCAGAATACGCTACTGTAGGATCTCCTTACCCTATTGAAATCCTTG
CTATAGGCAAAAAAGATTGTGTTGATGTTGTGATTACACAACAGCTACCTTGCGAAGCTGAATTCGTAAGCAGTGATCCA
GAAACAACTCCTACAAGTGATGGGAAATTAGTCTGGAAAATCGATCGCCTGGGTGCAGGAGATAAATGCAAAATTACTGT
ATGGGTAAAACCTCTTAAAGAAGGTTGCTGCTTCACAGCTGCTACTGTATGTGCTTGCCCAGAGCTCCGTTCTTATACTA
AATGCGGTCAACCAGCCATTTGTATTAAGCAAGAAGGACCTGACTGTGCTTGCCTAAGATGCCCTGTATGCTACAAAATC
GAAGTAGTGAACACAGGATCTGCTATTGCCCGTAACGTAACTGTAGATAATCCTGTTCCCGATGGCTATTCTCATGCATC
TGGTCAAAGAGTTCTCTCTTTTAACTTAGGAGACATGAGACCTGGCGATAAAAAGGTATTTACAGTTGAGTTCTGCCCTC
AAAGAAGAGGTCAAATCACTAACGTTGCTACTGTAACTTACTGCGGTGGACACAAATGTTCTGCAAATGTAACTACAGTT
GTTAATGAGCCTTGTGTACAAGTAAATATCTCTGGTGCTGATTGGTCTTACGTATGTAAACCTGTGGAGTACTCTATCTC
AGTATCGAATCCTGGAGACTTGGTTCTTCATGATGTCGTGATCCAAGATACACTCCCTTCTGGTGTTACAGTACTCGAAG
CTCCTGGTGGAGAGATCTGCTGTAATAAAGTTGTTTGGCGTATTAAAGAAATGTGCCCAGGAGAAACCCTCCAGTTTAAA
CTTGTAGTGAAAGCTCAAGTTCCTGGAAGATTCACAAATCAAGTTGCAGTAACTAGTGAGTCTAACTGCGGAACATGTAC
ATCTTGCGCAGAAACAACAACACATTGGAAAGGTCTTGCAGCTACCCATATGTGCGTATTAGACACAAATGATCCTATCT
GTGTAGGAGAAAATACTGTCTATCGTATCTGTGTAACTAACCGTGGTTCTGCTGAAGATACTAACGTATCTTTAATCTTG
AAGTTCTCAAAAGAACTTCAGCCAATAGCTTCTTCAGGTCCAACTAAAGGAACGATTTCAGGTAATACCGTTGTTTTCGA
CGCTTTACCTAAACTCGGTTCTAAGGAATCTGTAGAGTTTTCTGTTACCTTGAAAGGTATTGCTCCCGGAGATGCTCGCG
GCGAAGCTATTCTTTCTTCTGATACACTGACTTCACCAGTATCAGACACAGAAAATACCCACGTGTATTAA

Upstream 100 bases:

>100_bases
CCTTAATTCAGATAATAAACCCAAATGTTGAGGGTAAGAGTTTACAAAACATTCTACCCGATGGCAGAAGAAAAAAATAA
ACATGCGATAGGAGATCCCT

Downstream 100 bases:

>100_bases
ATTCTAAGGAATTATCCTAAAGCAGAGCGATATTCCGCTCTGCTTTAGGATAGCTTTCAAAGAAGTACCGCTTTAGTACC
TTACGTACTAAAGCGGTTTT

Product: 60 kDa cysteine-rich omp

Products: NA

Alternate protein names: Large-CRP; 60 kDa cysteine-rich OMP; 60 kDa CRP; 60 kDa outer membrane protein; Cysteine-rich outer membrane protein

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MSKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVRRNKQPVEQKSRGAFCDKEFY
PCEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPEYATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDP
ETTPTSDGKLVWKIDRLGAGDKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKI
EVVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQITNVATVTYCGGHKCSANVTTV
VNEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVVIQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFK
LVVKAQVPGRFTNQVAVTSESNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLIL
KFSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTSPVSDTENTHVY

Sequences:

>Translated_556_residues
MSKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVRRNKQPVEQKSRGAFCDKEFY
PCEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPEYATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDP
ETTPTSDGKLVWKIDRLGAGDKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKI
EVVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQITNVATVTYCGGHKCSANVTTV
VNEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVVIQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFK
LVVKAQVPGRFTNQVAVTSESNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLIL
KFSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTSPVSDTENTHVY
>Mature_555_residues
SKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVRRNKQPVEQKSRGAFCDKEFYP
CEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPEYATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDPE
TTPTSDGKLVWKIDRLGAGDKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKIE
VVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQITNVATVTYCGGHKCSANVTTVV
NEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVVIQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFKL
VVKAQVPGRFTNQVAVTSESNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLILK
FSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSSDTLTSPVSDTENTHVY

Specific function: In elementary bodies (EBs, the infectious stage, which is able to survive outside the host cell) provides the structural integrity of the outer envelope through disulfide cross-links with the small cysteine-rich protein and the major outer membrane porin.

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMCB_CHLPN (P23700)

Other databases:

- EMBL:   X53511
- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   A86560
- PIR:   S12602
- RefSeq:   NP_224753.1
- RefSeq:   NP_300612.1
- RefSeq:   NP_444746.1
- RefSeq:   NP_876851.1
- PHCI-2DPAGE:   P23700
- GeneID:   1467258
- GeneID:   895362
- GeneID:   919316
- GeneID:   963735
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0195
- KEGG:   cpn:CPn0557
- KEGG:   cpt:CpB0579
- TIGR:   CP_0195
- HOGENOM:   HBG414079
- OMA:   PICVGEN
- ProtClustDB:   CLSK871383
- BioCyc:   CPNE115711:CP_0195-MONOMER
- BioCyc:   CPNE115713:CPN0557-MONOMER
- BioCyc:   CPNE138677:CPJ0557-MONOMER
- BioCyc:   CPNE182082:CPB0579-MONOMER
- InterPro:   IPR003506
- InterPro:   IPR001434
- PRINTS:   PR01336
- TIGRFAMs:   TIGR01451

Pfam domain/function: PF03504 Chlam_OMP6; PF01345 DUF11

EC number: NA

Molecular weight: Translated: 59720; Mature: 59589

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
6.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVR
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RNKQPVEQKSRGAFCDKEFYPCEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPE
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCHHHHHCCCC
YATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDPETTPTSDGKLVWKIDRLGAG
HHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKI
CEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCEEEEECCEEEEE
EVVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQIT
EEEECCCHHEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEE
NVATVTYCGGHKCSANVTTVVNEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVV
EEEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCEEEEECEEEEEEECCCCCEEEEEEE
IQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFKLVVKAQVPGRFTNQVAVTSE
EECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEECC
SNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLIL
CCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCEEECCCCEEEEEEECCCCCCCCCEEEEE
KFSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSS
EECHHCCHHHCCCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEC
DTLTSPVSDTENTHVY
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLIRRVVTVLALTSMASCFASGGIEAAVAESLITKIVASAETKPAPVPMTAKKVRLVR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
RNKQPVEQKSRGAFCDKEFYPCEEGRCQPVEAQQESCYGRLYSVKVNDDCNVEICQSVPE
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEEEEEEECCCCCHHHHHCCCC
YATVGSPYPIEILAIGKKDCVDVVITQQLPCEAEFVSSDPETTPTSDGKLVWKIDRLGAG
HHHCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
DKCKITVWVKPLKEGCCFTAATVCACPELRSYTKCGQPAICIKQEGPDCACLRCPVCYKI
CEEEEEEEEEECCCCCHHHHHHHHCCHHHHHHHHCCCCEEEEECCCCCEEEEECCEEEEE
EVVNTGSAIARNVTVDNPVPDGYSHASGQRVLSFNLGDMRPGDKKVFTVEFCPQRRGQIT
EEEECCCHHEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCCCCEE
NVATVTYCGGHKCSANVTTVVNEPCVQVNISGADWSYVCKPVEYSISVSNPGDLVLHDVV
EEEEEEEECCCCCCCCEEEEECCCEEEEEECCCCCEEEEECEEEEEEECCCCCEEEEEEE
IQDTLPSGVTVLEAPGGEICCNKVVWRIKEMCPGETLQFKLVVKAQVPGRFTNQVAVTSE
EECCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEEEECC
SNCGTCTSCAETTTHWKGLAATHMCVLDTNDPICVGENTVYRICVTNRGSAEDTNVSLIL
CCCCCCCHHHHHHHHCCCEEEEEEEEEECCCCEEECCCCEEEEEEECCCCCCCCCEEEEE
KFSKELQPIASSGPTKGTISGNTVVFDALPKLGSKESVEFSVTLKGIAPGDARGEAILSS
EECHHCCHHHCCCCCCCEECCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEC
DTLTSPVSDTENTHVY
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2402463; 7582008; 10192388; 10684935; 10871362; 10839753