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The map label for this gene is yggF

Identifier: 15835772

GI number: 15835772

Start: 273384

End: 273839

Strand: Direct

Name: yggF

Synonym: CPj0237

Alternate gene names: 15835772

Gene position: 273384-273839 (Clockwise)

Preceding gene: 15835771

Following gene: 15835773

Centisome position: 22.29

GC content: 39.69

Gene sequence:

>456_bases
ATGTCTAAGCCATCTAGTTGCAAAGCATACCTTGGCATAGACTACGGGAAAAAACGGATCGGCCTTGCCTATGCAGCCGA
ACCCCTCCTATTGACACTACCGATTGGAAATATAGAAGCAGGTAAAAATCTTAAGTTGTCAGCAGAAGCTCTTCATAAGA
TTATTTTAAGTAGAAATATAACTTGTGTAGTTCTAGGGAATCCCCTTCCTATGCAAAAAGGTCTTTACTCATCTCTGCAA
GAGGAAGTTTCCTTACTTGCTGAGGAGCTTAAGAAGCTTTCTACGGTAGAAATCATCCTATGGGATGAACGGCTTTCTTC
AGTACAAGCGGAACGTATGTTAAAGCAAGATTGTGGACTAAGCAGAAAAGATCGGAAAGGAAAAACAGATTCCCTGGCTG
CAACATTAATCTTAACAAGTTTTCTAGATAGCTTACCTAAAAAACTAACCTTGTAA

Upstream 100 bases:

>100_bases
GTGCAATTCCATCCAGAATTTGTATCTAAACTCATCTCTCCCCATCCTCTATTTATCGCATTTATAGAAGCAGCTCTAGT
CTATTCTAAGGATGCAAGCC

Downstream 100 bases:

>100_bases
TCATCAAAAACTACGGGATTTTAATTTTAGAAACTTTTTACTTTTTGTTATTTTCGCAAGTGCGGGGACAAAAAAGGAGA
TAAAAATGACGAATGTTGTT

Product: Holliday junction resolvase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSKPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGNPLPMQKGLYSSLQ
EEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATLILTSFLDSLPKKLTL

Sequences:

>Translated_151_residues
MSKPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGNPLPMQKGLYSSLQ
EEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATLILTSFLDSLPKKLTL
>Mature_150_residues
SKPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNITCVVLGNPLPMQKGLYSSLQE
EVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGLSRKDRKGKTDSLAATLILTSFLDSLPKKLTL

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_CHLPN (Q9Z8U7)

Other databases:

- EMBL:   AE001363
- EMBL:   AE002161
- EMBL:   BA000008
- EMBL:   AE009440
- PIR:   B72103
- PIR:   D81568
- PIR:   E86520
- RefSeq:   NP_224446.1
- RefSeq:   NP_300296.1
- RefSeq:   NP_445069.1
- RefSeq:   NP_876519.1
- ProteinModelPortal:   Q9Z8U7
- SMR:   Q9Z8U7
- GeneID:   1466926
- GeneID:   895148
- GeneID:   918886
- GeneID:   962826
- GenomeReviews:   AE001363_GR
- GenomeReviews:   AE002161_GR
- GenomeReviews:   AE009440_GR
- GenomeReviews:   BA000008_GR
- KEGG:   cpa:CP0525
- KEGG:   cpj:CPj0237
- KEGG:   cpn:CPn0237
- KEGG:   cpt:CpB0243
- TIGR:   CP_0525
- HOGENOM:   HBG607919
- OMA:   VEVILWD
- ProtClustDB:   PRK00109
- BioCyc:   CPNE115711:CP_0525-MONOMER
- BioCyc:   CPNE115713:CPN0237-MONOMER
- BioCyc:   CPNE138677:CPJ0237-MONOMER
- BioCyc:   CPNE182082:CPB0243-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16584; Mature: 16453

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNI
CCCCCCCEEEEECCCCCHHHHHEEECCCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCC
TCVVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGL
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCC
SRKDRKGKTDSLAATLILTSFLDSLPKKLTL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKPSSCKAYLGIDYGKKRIGLAYAAEPLLLTLPIGNIEAGKNLKLSAEALHKIILSRNI
CCCCCCEEEEECCCCCHHHHHEEECCCEEEEEECCCCCCCCCCEECHHHHHHHHHHCCC
TCVVLGNPLPMQKGLYSSLQEEVSLLAEELKKLSTVEIILWDERLSSVQAERMLKQDCGL
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHCCC
SRKDRKGKTDSLAATLILTSFLDSLPKKLTL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10192388; 10684935; 10871362