Click here to switch to the map view.

The map label for this gene is ydjX [C]

Identifier: 158338192

GI number: 158338192

Start: 5138765

End: 5139517

Strand: Direct

Name: ydjX [C]

Synonym: AM1_5085

Alternate gene names: 158338192

Gene position: 5138765-5139517 (Clockwise)

Preceding gene: 158338191

Following gene: 158338193

Centisome position: 79.01

GC content: 50.2

Gene sequence:

>753_bases
ATGAATCTTCGTCGCTGGAAAAAAATTCAACCGATATTATTGGCCGCCTTTGCCTTTTTGGTGATTACGGCTTCACCCGC
TTGGGCCGCAGATGGGGGTGGGTTTAACCCCCAACAGCTCTTGAAGGATGCTTTATTGTGGATCGAGAGTTTAGGTACTG
TAGGTGCGATCGCATTTATCGGTATCTATATTGTTGCCACTGTGGCCTTTTTACCCGGCTCCGTTTTGACCTTAGGAGCT
GGTGTTGTTTTCGGGGTGGTTCAAGGCTCTTTTTTGGTCTTTATTGGCGCTACCATCGGTGCGACTCTCGCATTCCTCGT
GGGCCGATATGCGGCTCGGGGTTGGATCTCTAAAAAAATTGAAGGCAACGATAAATTCGCAGCCATTGATCGGGCTGTGG
GCAAAGAAGGATTTAAGATTGTTCTGTTAACCCGATTGTCCCCCATCTTCCCCTTTAACCTCCTCAACTATGGCATGGGC
GTTACGGGTGTCTCTCTTAGAGATTACTTCTTCGGCTCCGTGGGCATGATTCCCGGCACCATTATGTACGTCTATCTGGG
ATCTCTCGCGGGGAATATTGCTACCCTCGGCACAGGCGATCAACCTTCTAACCCCACCATTACCTGGGCCATCCGCATTA
TCGGTTTTGTGGCCACGGTTCTTGTGACCGTCTATGTGACGAAAGTGGCCCGCAAAGCCTTGGCAGAAGCAGTCCCTGAA
ACTGGTACTGCGGTTGAGCAAGAGCTAAGTTAA

Upstream 100 bases:

>100_bases
GTGAAAACAGCGCCCTATTGCTATGGCTGCACCGCTGGGAGTGGTTCGAGCTGCGGCGGTTCTTTGTTATGACATCACAC
ACATTTTTAAAGGTAAATCT

Downstream 100 bases:

>100_bases
TGCTGCAAGAAGGACTACGCCATCGGCAAGTGAAAGGTCGCAGACGATTACTAGCAGGATTGGTAGGGGTGTTGTTGCTT
CCCTTCGCCATCCGGTATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNLRRWKKIQPILLAAFAFLVITASPAWAADGGGFNPQQLLKDALLWIESLGTVGAIAFIGIYIVATVAFLPGSVLTLGA
GVVFGVVQGSFLVFIGATIGATLAFLVGRYAARGWISKKIEGNDKFAAIDRAVGKEGFKIVLLTRLSPIFPFNLLNYGMG
VTGVSLRDYFFGSVGMIPGTIMYVYLGSLAGNIATLGTGDQPSNPTITWAIRIIGFVATVLVTVYVTKVARKALAEAVPE
TGTAVEQELS

Sequences:

>Translated_250_residues
MNLRRWKKIQPILLAAFAFLVITASPAWAADGGGFNPQQLLKDALLWIESLGTVGAIAFIGIYIVATVAFLPGSVLTLGA
GVVFGVVQGSFLVFIGATIGATLAFLVGRYAARGWISKKIEGNDKFAAIDRAVGKEGFKIVLLTRLSPIFPFNLLNYGMG
VTGVSLRDYFFGSVGMIPGTIMYVYLGSLAGNIATLGTGDQPSNPTITWAIRIIGFVATVLVTVYVTKVARKALAEAVPE
TGTAVEQELS
>Mature_250_residues
MNLRRWKKIQPILLAAFAFLVITASPAWAADGGGFNPQQLLKDALLWIESLGTVGAIAFIGIYIVATVAFLPGSVLTLGA
GVVFGVVQGSFLVFIGATIGATLAFLVGRYAARGWISKKIEGNDKFAAIDRAVGKEGFKIVLLTRLSPIFPFNLLNYGMG
VTGVSLRDYFFGSVGMIPGTIMYVYLGSLAGNIATLGTGDQPSNPTITWAIRIIGFVATVLVTVYVTKVARKALAEAVPE
TGTAVEQELS

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Homo sapiens, GI223555958, Length=219, Percent_Identity=31.5068493150685, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226371762, Length=124, Percent_Identity=37.0967741935484, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87081964, Length=146, Percent_Identity=32.8767123287671, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788049, Length=144, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356469, Length=210, Percent_Identity=29.5238095238095, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 26436; Mature: 26436

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCHHHHHCC
>Mature Secondary Structure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CCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]