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The map label for this gene is 158336802

Identifier: 158336802

GI number: 158336802

Start: 3725806

End: 3726885

Strand: Reverse

Name: 158336802

Synonym: AM1_3670

Alternate gene names: NA

Gene position: 3726885-3725806 (Counterclockwise)

Preceding gene: 158336804

Following gene: 158336801

Centisome position: 57.3

GC content: 46.85

Gene sequence:

>1080_bases
ATGGTACAAATGGCCCTGGAGTCTCCCACCGATCATCGGCAAGTTGAACGCTTTTGCCAAGAGATATTGCCACAAGTCTC
TCGCACCTTTGCCTTAAGTATTCGGTTTTTACCAGGCAACCTAGGACGTGCCGTCCTCTGTGGTTACTTACTGGCTAGAA
TTGCAGACACCATCGAAGATGATCCCGTCGCCACAGTAGAATCCAAAATCAGACTCTTGGACAAATTTTTAGCCTGCTTT
GATGATCCAGCTCAGGCCGATATTTTCCCCCAAGTCGTCGGCACCCTAGAAGGGGAAACAGCCCATCTCCATTTGGTTGA
AAACACCCATCTTGTTTTTGCCCTATTTCGTAGTTTACCGGCCAAATCACAACAGACCCTACAGCATTGGATTACAGAAA
TGGTGCAGGGGATGCAAAAGTTCGTCAAACTGCATGCCCAAGGCATCCGCATTAAAACCCTAGAAGAATATCAAGAATAT
TGTTACTACGTCGCCGGTACCGTTGGCTATTTGCTCACAGATTTATGGTTTGAGCATTCTCCCAGCGTTGATTTTGCCAC
ATACCATACCCTGCGGCAGACCTGTGCAGCCTTTGGTGAAGGGTTACAAACCGTCAATATTCTCAAGGATATTGCTTGGG
ATGCTGAACATGAAAACTCCATTTATGTCCCCCAAGATGCCTTAGAATCCCATGGCAGCAGTCATGAGAAACTGTTAGAT
CCAGAGTTTCTCACCCAGAATCATGCGGCCATCACATCTTTGGTAGAACTGGCGTGGTCCGATCTGGATAAAGCAGCCCA
ATATTTGATGGAGGTTCCTCGGTCTGCCATCCCTATTCGGCTTTTTTGCATCTTGCCTCTAGTGTTTGCCTATGCGACCC
TGCGGGATATCACCGGATCAACCGCAATGCTCAAATCTGGCGGGAATATTAAAATTTCCAGAGCAGAGGTCAAGTCTTTA
ATTATGGTGGGTCCCTTCACCGTATTAAGTAACTTCACTATCCGTCGCCTGATTGATCAAGTCCGCCAGCAACCCTTTCT
ATGGGGTAATAAAAACACTTCATTCAAGAAAGTGGCCTAG

Upstream 100 bases:

>100_bases
ACATACTCATTCGTCAACGAGTGATGCTGTCCTTAAAGACCTCTGTGGCCGTGGTGTGATTTGCATTTTGAGTGTTGGTT
TAAAGCAGGAGTGAACGATT

Downstream 100 bases:

>100_bases
GGCTTCCCCAGTTATTGGCAGCTGTAGCGCCCGGGTAAATAAAGACCTATGGTTAGGTTAAGGATCCATAACTAGTAAAC
ATTTTCTAGCTACGTTACGG

Product: squalene and phytoene synthase

Products: NA

Alternate protein names: Farnesyl-Diphosphate Farnesyltransferase; Squalene Synthase; Squalene/Phytoene Synthase Family Protein; Squalene And Phytoene Synthase; Phytoene/Squalene Synthetase Family Protein; Squalene/Phytoene Synthase-Like Protein; Phytoene/Squalene Synthetase; SQS PSY Squalene/Phytoene Synthase-Like Protein

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MVQMALESPTDHRQVERFCQEILPQVSRTFALSIRFLPGNLGRAVLCGYLLARIADTIEDDPVATVESKIRLLDKFLACF
DDPAQADIFPQVVGTLEGETAHLHLVENTHLVFALFRSLPAKSQQTLQHWITEMVQGMQKFVKLHAQGIRIKTLEEYQEY
CYYVAGTVGYLLTDLWFEHSPSVDFATYHTLRQTCAAFGEGLQTVNILKDIAWDAEHENSIYVPQDALESHGSSHEKLLD
PEFLTQNHAAITSLVELAWSDLDKAAQYLMEVPRSAIPIRLFCILPLVFAYATLRDITGSTAMLKSGGNIKISRAEVKSL
IMVGPFTVLSNFTIRRLIDQVRQQPFLWGNKNTSFKKVA

Sequences:

>Translated_359_residues
MVQMALESPTDHRQVERFCQEILPQVSRTFALSIRFLPGNLGRAVLCGYLLARIADTIEDDPVATVESKIRLLDKFLACF
DDPAQADIFPQVVGTLEGETAHLHLVENTHLVFALFRSLPAKSQQTLQHWITEMVQGMQKFVKLHAQGIRIKTLEEYQEY
CYYVAGTVGYLLTDLWFEHSPSVDFATYHTLRQTCAAFGEGLQTVNILKDIAWDAEHENSIYVPQDALESHGSSHEKLLD
PEFLTQNHAAITSLVELAWSDLDKAAQYLMEVPRSAIPIRLFCILPLVFAYATLRDITGSTAMLKSGGNIKISRAEVKSL
IMVGPFTVLSNFTIRRLIDQVRQQPFLWGNKNTSFKKVA
>Mature_359_residues
MVQMALESPTDHRQVERFCQEILPQVSRTFALSIRFLPGNLGRAVLCGYLLARIADTIEDDPVATVESKIRLLDKFLACF
DDPAQADIFPQVVGTLEGETAHLHLVENTHLVFALFRSLPAKSQQTLQHWITEMVQGMQKFVKLHAQGIRIKTLEEYQEY
CYYVAGTVGYLLTDLWFEHSPSVDFATYHTLRQTCAAFGEGLQTVNILKDIAWDAEHENSIYVPQDALESHGSSHEKLLD
PEFLTQNHAAITSLVELAWSDLDKAAQYLMEVPRSAIPIRLFCILPLVFAYATLRDITGSTAMLKSGGNIKISRAEVKSL
IMVGPFTVLSNFTIRRLIDQVRQQPFLWGNKNTSFKKVA

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI67089147, Length=308, Percent_Identity=27.2727272727273, Blast_Score=92, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40487; Mature: 40487

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQMALESPTDHRQVERFCQEILPQVSRTFALSIRFLPGNLGRAVLCGYLLARIADTIED
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
DPVATVESKIRLLDKFLACFDDPAQADIFPQVVGTLEGETAHLHLVENTHLVFALFRSLP
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCC
AKSQQTLQHWITEMVQGMQKFVKLHAQGIRIKTLEEYQEYCYYVAGTVGYLLTDLWFEHS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSVDFATYHTLRQTCAAFGEGLQTVNILKDIAWDAEHENSIYVPQDALESHGSSHEKLLD
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEECCHHHHHCCCCCCHHCCC
PEFLTQNHAAITSLVELAWSDLDKAAQYLMEVPRSAIPIRLFCILPLVFAYATLRDITGS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
TAMLKSGGNIKISRAEVKSLIMVGPFTVLSNFTIRRLIDQVRQQPFLWGNKNTSFKKVA
HHHHCCCCCEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure
MVQMALESPTDHRQVERFCQEILPQVSRTFALSIRFLPGNLGRAVLCGYLLARIADTIED
CCEECCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCC
DPVATVESKIRLLDKFLACFDDPAQADIFPQVVGTLEGETAHLHLVENTHLVFALFRSLP
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCC
AKSQQTLQHWITEMVQGMQKFVKLHAQGIRIKTLEEYQEYCYYVAGTVGYLLTDLWFEHS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCC
PSVDFATYHTLRQTCAAFGEGLQTVNILKDIAWDAEHENSIYVPQDALESHGSSHEKLLD
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEECCHHHHHCCCCCCHHCCC
PEFLTQNHAAITSLVELAWSDLDKAAQYLMEVPRSAIPIRLFCILPLVFAYATLRDITGS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
TAMLKSGGNIKISRAEVKSLIMVGPFTVLSNFTIRRLIDQVRQQPFLWGNKNTSFKKVA
HHHHCCCCCEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA