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The map label for this gene is sodB [H]

Identifier: 158336801

GI number: 158336801

Start: 3724913

End: 3725512

Strand: Reverse

Name: sodB [H]

Synonym: AM1_3669

Alternate gene names: 158336801

Gene position: 3725512-3724913 (Counterclockwise)

Preceding gene: 158336802

Following gene: 158336798

Centisome position: 57.28

GC content: 49.0

Gene sequence:

>600_bases
ATGGTTTACCAACTACCTGACCTGCCGTACGATTACAACGCTTTAGAGCCTCATATTTCCGCCCGAACCCTAGAGTTCCA
CCATGACAAACACCATGCAGCATATGTGACCAAGTGTAATGGCATGACCAAGGATACTCCGATGGATGACATGTCCATTG
AGGAAGTCATTCAGTCTGCCTACAAGGATTCTGCCAAAGCCGGTCTCTTTAACAATGCAGCCCAAGCTTGGAACCACAGC
TTTTATTGGAACTCCATGAAGCCCGGCGGCGGTGGTCTGCCCGGTGGTGCATTAGCGGCCCAAATCAATACGGATTTTGG
CAACTACGATAACTTTAAGGCTGCTTTTAAGGAAGCTGGCGCCACTCAGTTTGGCAGTGGCTGGGCTTGGCTCGTCTTGG
AGAATGGCAAGCTAAAAATCACCAAAACACCCAATGCTGAAAATCCGTTGGTCCATGGGCAAACCCCTTTGCTGACGATG
GATGTTTGGGAGCATGCCTATTATCTAGATTTCCAAAACAGCCGTCCTGGCTATATTGACACCTTTTTATCTAGCTTGGT
CAACTGGGACTTTGCCGCCCAAAACTTTGGAGCCGCCTAA

Upstream 100 bases:

>100_bases
GCTGTTACAGCCGTATAGTCCCATCGAATTAGAGTCGTTTTTAGATCACCATGATCTTGAAAAGGCTCATTTACCCTATT
GTCAAGAGAGGATGAACTGC

Downstream 100 bases:

>100_bases
TCCAAGGATGCGGTAGACCGATCTCTATTTAGAATCAAAAGAGGCGCTGTACAGCGCCTCTTTTGATTAGCGCAATCCCA
CCCAAGTAAAGAAATCTTGG

Product: superoxide dismutase Mn/Fe domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MVYQLPDLPYDYNALEPHISARTLEFHHDKHHAAYVTKCNGMTKDTPMDDMSIEEVIQSAYKDSAKAGLFNNAAQAWNHS
FYWNSMKPGGGGLPGGALAAQINTDFGNYDNFKAAFKEAGATQFGSGWAWLVLENGKLKITKTPNAENPLVHGQTPLLTM
DVWEHAYYLDFQNSRPGYIDTFLSSLVNWDFAAQNFGAA

Sequences:

>Translated_199_residues
MVYQLPDLPYDYNALEPHISARTLEFHHDKHHAAYVTKCNGMTKDTPMDDMSIEEVIQSAYKDSAKAGLFNNAAQAWNHS
FYWNSMKPGGGGLPGGALAAQINTDFGNYDNFKAAFKEAGATQFGSGWAWLVLENGKLKITKTPNAENPLVHGQTPLLTM
DVWEHAYYLDFQNSRPGYIDTFLSSLVNWDFAAQNFGAA
>Mature_199_residues
MVYQLPDLPYDYNALEPHISARTLEFHHDKHHAAYVTKCNGMTKDTPMDDMSIEEVIQSAYKDSAKAGLFNNAAQAWNHS
FYWNSMKPGGGGLPGGALAAQINTDFGNYDNFKAAFKEAGATQFGSGWAWLVLENGKLKITKTPNAENPLVHGQTPLLTM
DVWEHAYYLDFQNSRPGYIDTFLSSLVNWDFAAQNFGAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=42.0792079207921, Blast_Score=152, Evalue=1e-37,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=42.0792079207921, Blast_Score=152, Evalue=1e-37,
Organism=Homo sapiens, GI67782309, Length=201, Percent_Identity=35.8208955223881, Blast_Score=120, Evalue=9e-28,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=51.7587939698493, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1790342, Length=207, Percent_Identity=46.8599033816425, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=35.1485148514851, Blast_Score=124, Evalue=5e-29,
Organism=Caenorhabditis elegans, GI17569479, Length=201, Percent_Identity=35.3233830845771, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6321796, Length=206, Percent_Identity=35.4368932038835, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136812, Length=208, Percent_Identity=33.6538461538462, Blast_Score=113, Evalue=8e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22118; Mature: 22118

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYQLPDLPYDYNALEPHISARTLEFHHDKHHAAYVTKCNGMTKDTPMDDMSIEEVIQSA
CEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
YKDSAKAGLFNNAAQAWNHSFYWNSMKPGGGGLPGGALAAQINTDFGNYDNFKAAFKEAG
HHHHHHCCCHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
ATQFGSGWAWLVLENGKLKITKTPNAENPLVHGQTPLLTMDVWEHAYYLDFQNSRPGYID
CCCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCEEEEEECCCCCCHHH
TFLSSLVNWDFAAQNFGAA
HHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MVYQLPDLPYDYNALEPHISARTLEFHHDKHHAAYVTKCNGMTKDTPMDDMSIEEVIQSA
CEEECCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHH
YKDSAKAGLFNNAAQAWNHSFYWNSMKPGGGGLPGGALAAQINTDFGNYDNFKAAFKEAG
HHHHHHCCCHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCC
ATQFGSGWAWLVLENGKLKITKTPNAENPLVHGQTPLLTMDVWEHAYYLDFQNSRPGYID
CCCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEECCCEEEEEECCCCCCHHH
TFLSSLVNWDFAAQNFGAA
HHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]