| Definition | Acaryochloris marina MBIC11017 chromosome, complete genome. |
|---|---|
| Accession | NC_009925 |
| Length | 6,503,724 |
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The map label for this gene is amyB [H]
Identifier: 158335478
GI number: 158335478
Start: 2329503
End: 2331938
Strand: Reverse
Name: amyB [H]
Synonym: AM1_2326
Alternate gene names: 158335478
Gene position: 2331938-2329503 (Counterclockwise)
Preceding gene: 158335482
Following gene: 158335476
Centisome position: 35.86
GC content: 51.68
Gene sequence:
>2436_bases ATGGTTAATCCTAACGATCCGAACTCTGAATCAGGTGGAGTCCCTTCTTCAGAACCTGGCTCGGATCCTAGTAATGCTCC CAGTGCCGATTCTGGCCCTATTTCTGACGAGTTGTTTGATTCGTTGTCAGAATTGTTAGGAGATACCCCTGCCAATGATG AGCCTGCCTCTCTACCAGATTTAGACTCTTGGTCAGAGGAATCCACGGAACCTCCGCCTCCTACGGAAGAGCTGGGAACA ACCCTTGGCGATACGACGCTTATTCAAATGGGGCCAGATGTAGAAACGCCTCCAATAGAAGAGTTGAGTGGAATTGGCGA TAGTTTAGAATCCGTTGATCCGACTAATATGCCGTTAGTAGGTGAAGACGAAGGTACTCAGCCCCTAGATGCCTGGTCAG AGACGTCATCAGACTCCAGCTCTCCTGTCCTGGGTGACTTGGATTTACCTGGGAATTTAACTCCTGAGGGAGGTGAGCTG CCAGACCCCAGTCTTCCAGATATATCAGCAGCACCAACCGATTCATCTGATATTTTGTCCGATCCGTTTGCGCCCCCTCC CGTAGAGCCACCTGTCGATTTGACTCCTGTAGTCGATGAATCATCAGACCCCAATCTTCCTGATATAGCAGCATCGACCA GTGCTGGAGATACCCTCTCCGATCCTTGGTCTGAACCAGCTGCTGACGAACAATCGCTGATTACCCCGCTGAGTGCAGAG ATTGAAGAGCCAACTCTGATTCAGCCCCCTGATGCTCCAACCATCAACGAACCTGTTGAAGAACCTATACCCTTAGAGTC CACGCCAGAAGAGAGTTCGTTACCTGATCCGTGGATGGATGATCTTGAGCCTGCTGGTGCTGAAGATCCCATATCAGAGA TTTCGACCCCAGAAACGACCGATGTCTCAGGGCCAAATATTCCTCCTGTGGATGCCCTGATTCCTGATGTTGTGGCTGAT GTGCCGGTTAGTGCTGACATACCAGCAGTGGAACCTGAGATAGAAGAACTGCCAACACCAGAAGATCAACCATTAACGGT GGGTGAAGATGTCTCCTTACCAGAAGATGCGTCGTTGCCAATCGGTGAAAATCTACCAGTGGCAGAGTCACCACTCCCCA TCGATACAGAAGCTTCCCCAGATAGCGATGCAACACCTTTAGCAGCCAGCCCAGGGTTTATCAGTTCTGATATGGGAGAT GTGCCGACAAGTGACGTAGGGGCTGCCCCCACTGATCTGGTTGATCCAGATGCCCCTGCAGCTGATATTCCTGCTGTGAT TCCTCCGTTAGGAGAGATGACAGGCGAGAGCGTTTCTGCGCCTGAAGCGGAGGGCCTTGAGTCTATACCCGCCGTAGAAA GTGATGGTGAACCCGAGGTTCCCTCAACTCCGGTACCAGATCCTGTGCCAGCACCAGAGCCAGTGGCTGTGGGTTCAGGT CCTTCTACTGGGGCAAATGCAGGCGATTTAGGTGCGTTAAGCGGTAAATTACCCCTTAACCGTGTTCAGGTTGTTGGTTT ATTGGTCGCTCTGTCAACGTTAGGCACCATTACCTATTTGGGGGTGACTGGCAATCAGCAAGACCCCTCTCTAACACCAC CTTCCGCTCCATCAGTCTCTTCTTCGCCGCTGAACCCGAACCCATCGGCCAATAGCCCATCCGGTGAATCAGCAGGTGAC TCACCTATTGCCAGTGCTCCTTTTGCTAGTGAAGATGCTCCGAGTACCGGTGAGACAGGGAATACGCCTGGACAGGCTCC AACTAGTCAAACAGCAGCTGTTCGGCAAAGCCCTACAGAAGCGATTGGCGGCCTAGATGCACCGGGTGTCATTCCCTCGC AGCTTGATATTTCTGATGTTCCTGAGGATCATTGGGCTTATCCTTTTATCACCAAGCTGCATGCCCAGGGGATTATTCCG GATTACCCGGATGGCAAGTTCCAGCCCGATAAGCCGGTGACGCGGGCTGAACTGGCCGCTCAAATTCAACGTGCGTTTGT CAATGAGCCCGGCCAGCGTGCTCTAACCTTTTCTGATATTGCATCAGATTATTGGGCTGCAGGCGCCATTGAAGACGCGG TCGATAAGAAATTTATGAGCGGATATCCGGAAGGAGATTTTCAGCCGGATAAGCTTGTGCCCAGATATGAAGTATTAGTG GCTCTGGTCAGTGGGTTAGAACTGGACATTCCTACTTCCCCAGAAACTAGCCTGCAGCAGTTCCAAGATCAGAGCCAGCT CCCCGATTGGTCAAAAGGAAAAATTGCCGCTTCGACCCAAGAAAATATTGTGGTGAGTCATCCTGAGCCGGGACTATTGA AGCCAGAGGCCAATGCTACTCGGGCAGAAGTCGCCGCCATGATTTACCAGGCGCTGGTTCAATCAGGGCGGCTAGAGCCT ATTGAGTCTGAATATGTAGTGACGCCAGATTCTTAA
Upstream 100 bases:
>100_bases GTCCATGAATTCTAAAAAGAATGTGCGGAGGTGCGATCGCACCTTCAGTACCCCTGTAGGATGGTTGCCAAAGATTAAAC CCTAAAAATGGCTCAATATT
Downstream 100 bases:
>100_bases GGGCTGATCACGTCAGAGGATGAAAATAAAAGGCTAATCCTAACACTGCATAGGTGGCGAGGAGCAGCGTCCCTTCTAAC CAGTTGGACTGACCATCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: Alpha-amylase/pullulanase; Pullulanase type II; Alpha-amylase; 1,4-alpha-D-glucan glucanohydrolase; Pullulanase; 1,4-alpha-D-glucan glucanohydrolase; Alpha-dextrin endo-1,6-alpha-glucosidase [H]
Number of amino acids: Translated: 811; Mature: 811
Protein sequence:
>811_residues MVNPNDPNSESGGVPSSEPGSDPSNAPSADSGPISDELFDSLSELLGDTPANDEPASLPDLDSWSEESTEPPPPTEELGT TLGDTTLIQMGPDVETPPIEELSGIGDSLESVDPTNMPLVGEDEGTQPLDAWSETSSDSSSPVLGDLDLPGNLTPEGGEL PDPSLPDISAAPTDSSDILSDPFAPPPVEPPVDLTPVVDESSDPNLPDIAASTSAGDTLSDPWSEPAADEQSLITPLSAE IEEPTLIQPPDAPTINEPVEEPIPLESTPEESSLPDPWMDDLEPAGAEDPISEISTPETTDVSGPNIPPVDALIPDVVAD VPVSADIPAVEPEIEELPTPEDQPLTVGEDVSLPEDASLPIGENLPVAESPLPIDTEASPDSDATPLAASPGFISSDMGD VPTSDVGAAPTDLVDPDAPAADIPAVIPPLGEMTGESVSAPEAEGLESIPAVESDGEPEVPSTPVPDPVPAPEPVAVGSG PSTGANAGDLGALSGKLPLNRVQVVGLLVALSTLGTITYLGVTGNQQDPSLTPPSAPSVSSSPLNPNPSANSPSGESAGD SPIASAPFASEDAPSTGETGNTPGQAPTSQTAAVRQSPTEAIGGLDAPGVIPSQLDISDVPEDHWAYPFITKLHAQGIIP DYPDGKFQPDKPVTRAELAAQIQRAFVNEPGQRALTFSDIASDYWAAGAIEDAVDKKFMSGYPEGDFQPDKLVPRYEVLV ALVSGLELDIPTSPETSLQQFQDQSQLPDWSKGKIAASTQENIVVSHPEPGLLKPEANATRAEVAAMIYQALVQSGRLEP IESEYVVTPDS
Sequences:
>Translated_811_residues MVNPNDPNSESGGVPSSEPGSDPSNAPSADSGPISDELFDSLSELLGDTPANDEPASLPDLDSWSEESTEPPPPTEELGT TLGDTTLIQMGPDVETPPIEELSGIGDSLESVDPTNMPLVGEDEGTQPLDAWSETSSDSSSPVLGDLDLPGNLTPEGGEL PDPSLPDISAAPTDSSDILSDPFAPPPVEPPVDLTPVVDESSDPNLPDIAASTSAGDTLSDPWSEPAADEQSLITPLSAE IEEPTLIQPPDAPTINEPVEEPIPLESTPEESSLPDPWMDDLEPAGAEDPISEISTPETTDVSGPNIPPVDALIPDVVAD VPVSADIPAVEPEIEELPTPEDQPLTVGEDVSLPEDASLPIGENLPVAESPLPIDTEASPDSDATPLAASPGFISSDMGD VPTSDVGAAPTDLVDPDAPAADIPAVIPPLGEMTGESVSAPEAEGLESIPAVESDGEPEVPSTPVPDPVPAPEPVAVGSG PSTGANAGDLGALSGKLPLNRVQVVGLLVALSTLGTITYLGVTGNQQDPSLTPPSAPSVSSSPLNPNPSANSPSGESAGD SPIASAPFASEDAPSTGETGNTPGQAPTSQTAAVRQSPTEAIGGLDAPGVIPSQLDISDVPEDHWAYPFITKLHAQGIIP DYPDGKFQPDKPVTRAELAAQIQRAFVNEPGQRALTFSDIASDYWAAGAIEDAVDKKFMSGYPEGDFQPDKLVPRYEVLV ALVSGLELDIPTSPETSLQQFQDQSQLPDWSKGKIAASTQENIVVSHPEPGLLKPEANATRAEVAAMIYQALVQSGRLEP IESEYVVTPDS >Mature_811_residues MVNPNDPNSESGGVPSSEPGSDPSNAPSADSGPISDELFDSLSELLGDTPANDEPASLPDLDSWSEESTEPPPPTEELGT TLGDTTLIQMGPDVETPPIEELSGIGDSLESVDPTNMPLVGEDEGTQPLDAWSETSSDSSSPVLGDLDLPGNLTPEGGEL PDPSLPDISAAPTDSSDILSDPFAPPPVEPPVDLTPVVDESSDPNLPDIAASTSAGDTLSDPWSEPAADEQSLITPLSAE IEEPTLIQPPDAPTINEPVEEPIPLESTPEESSLPDPWMDDLEPAGAEDPISEISTPETTDVSGPNIPPVDALIPDVVAD VPVSADIPAVEPEIEELPTPEDQPLTVGEDVSLPEDASLPIGENLPVAESPLPIDTEASPDSDATPLAASPGFISSDMGD VPTSDVGAAPTDLVDPDAPAADIPAVIPPLGEMTGESVSAPEAEGLESIPAVESDGEPEVPSTPVPDPVPAPEPVAVGSG PSTGANAGDLGALSGKLPLNRVQVVGLLVALSTLGTITYLGVTGNQQDPSLTPPSAPSVSSSPLNPNPSANSPSGESAGD SPIASAPFASEDAPSTGETGNTPGQAPTSQTAAVRQSPTEAIGGLDAPGVIPSQLDISDVPEDHWAYPFITKLHAQGIIP DYPDGKFQPDKPVTRAELAAQIQRAFVNEPGQRALTFSDIASDYWAAGAIEDAVDKKFMSGYPEGDFQPDKLVPRYEVLV ALVSGLELDIPTSPETSLQQFQDQSQLPDWSKGKIAASTQENIVVSHPEPGLLKPEANATRAEVAAMIYQALVQSGRLEP IESEYVVTPDS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted, cell wall. Note=It C-terminus may serve as an S-layer anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 SLH (S-layer homology) domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006048 - InterPro: IPR013784 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR013780 - InterPro: IPR006047 - InterPro: IPR004185 - InterPro: IPR006589 - InterPro: IPR002044 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR014756 - InterPro: IPR001119 [H]
Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N; PF00395 SLH [H]
EC number: =3.2.1.1; =3.2.1.41 [H]
Molecular weight: Translated: 83454; Mature: 83454
Theoretical pI: Translated: 3.22; Mature: 3.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVNPNDPNSESGGVPSSEPGSDPSNAPSADSGPISDELFDSLSELLGDTPANDEPASLPD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC LDSWSEESTEPPPPTEELGTTLGDTTLIQMGPDVETPPIEELSGIGDSLESVDPTNMPLV CCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHCCCCCCCEE GEDEGTQPLDAWSETSSDSSSPVLGDLDLPGNLTPEGGELPDPSLPDISAAPTDSSDILS CCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC DPFAPPPVEPPVDLTPVVDESSDPNLPDIAASTSAGDTLSDPWSEPAADEQSLITPLSAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHC IEEPTLIQPPDAPTINEPVEEPIPLESTPEESSLPDPWMDDLEPAGAEDPISEISTPETT CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCCCC DVSGPNIPPVDALIPDVVADVPVSADIPAVEPEIEELPTPEDQPLTVGEDVSLPEDASLP CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC IGENLPVAESPLPIDTEASPDSDATPLAASPGFISSDMGDVPTSDVGAAPTDLVDPDAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADIPAVIPPLGEMTGESVSAPEAEGLESIPAVESDGEPEVPSTPVPDPVPAPEPVAVGSG CCCCCCCCCHHHHCCCCCCCCCHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC PSTGANAGDLGALSGKLPLNRVQVVGLLVALSTLGTITYLGVTGNQQDPSLTPPSAPSVS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCC SSPLNPNPSANSPSGESAGDSPIASAPFASEDAPSTGETGNTPGQAPTSQTAAVRQSPTE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHH AIGGLDAPGVIPSQLDISDVPEDHWAYPFITKLHAQGIIPDYPDGKFQPDKPVTRAELAA HHCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH QIQRAFVNEPGQRALTFSDIASDYWAAGAIEDAVDKKFMSGYPEGDFQPDKLVPRYEVLV HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHH ALVSGLELDIPTSPETSLQQFQDQSQLPDWSKGKIAASTQENIVVSHPEPGLLKPEANAT HHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCHH RAEVAAMIYQALVQSGRLEPIESEYVVTPDS HHHHHHHHHHHHHHCCCCCCCCCCEEECCCC >Mature Secondary Structure MVNPNDPNSESGGVPSSEPGSDPSNAPSADSGPISDELFDSLSELLGDTPANDEPASLPD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC LDSWSEESTEPPPPTEELGTTLGDTTLIQMGPDVETPPIEELSGIGDSLESVDPTNMPLV CCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCHHHHHCCCCCCCEE GEDEGTQPLDAWSETSSDSSSPVLGDLDLPGNLTPEGGELPDPSLPDISAAPTDSSDILS CCCCCCCCHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC DPFAPPPVEPPVDLTPVVDESSDPNLPDIAASTSAGDTLSDPWSEPAADEQSLITPLSAE CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHCCHHHC IEEPTLIQPPDAPTINEPVEEPIPLESTPEESSLPDPWMDDLEPAGAEDPISEISTPETT CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHCCCCCCC DVSGPNIPPVDALIPDVVADVPVSADIPAVEPEIEELPTPEDQPLTVGEDVSLPEDASLP CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCC IGENLPVAESPLPIDTEASPDSDATPLAASPGFISSDMGDVPTSDVGAAPTDLVDPDAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ADIPAVIPPLGEMTGESVSAPEAEGLESIPAVESDGEPEVPSTPVPDPVPAPEPVAVGSG CCCCCCCCCHHHHCCCCCCCCCHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC PSTGANAGDLGALSGKLPLNRVQVVGLLVALSTLGTITYLGVTGNQQDPSLTPPSAPSVS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCC SSPLNPNPSANSPSGESAGDSPIASAPFASEDAPSTGETGNTPGQAPTSQTAAVRQSPTE CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHH AIGGLDAPGVIPSQLDISDVPEDHWAYPFITKLHAQGIIPDYPDGKFQPDKPVTRAELAA HHCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH QIQRAFVNEPGQRALTFSDIASDYWAAGAIEDAVDKKFMSGYPEGDFQPDKLVPRYEVLV HHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHH ALVSGLELDIPTSPETSLQQFQDQSQLPDWSKGKIAASTQENIVVSHPEPGLLKPEANAT HHHHCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEECCCCCEEEECCCCCCCCCCCCHH RAEVAAMIYQALVQSGRLEPIESEYVVTPDS HHHHHHHHHHHHHHCCCCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8195085 [H]