Click here to switch to the map view.

The map label for this gene is ccdA [C]

Identifier: 158334973

GI number: 158334973

Start: 1798099

End: 1798836

Strand: Reverse

Name: ccdA [C]

Synonym: AM1_1810

Alternate gene names: 158334973

Gene position: 1798836-1798099 (Counterclockwise)

Preceding gene: 158334974

Following gene: 158334972

Centisome position: 27.66

GC content: 49.19

Gene sequence:

>738_bases
ATGCTGGAAACGCTGGAAATTCAGCTTTATCACCTTGAACAATTTGCGAATTCAATTGTTTCGACCCAACTCTCTCATCT
TTCTGCTTTGAGTGTTGGCATTATCTTTTTGGCAGGCCTATTAACCAGCCTTACCCCCTGTACTTTGTCGATGCTGCCGA
TAACGGTGGGCTATATCGGTGGCTATGAAACGGAGAACCGTTGGCAAGCCATGGCTCAATCCGTTTGGTTCTGTTTAGGC
TTAGCCTCGACGCTGGCAGGCTTGGGAATTGGTGCAGCGCTACTGGGGCGGGTCTATGGGCAAATCGGTGTAGGGCTGGC
TATTGTAGTCAGTCTAGTCGCCATTATCATGGGGCTCAATTTACTGGAAGCGTTACCGCTCCGATTACCGAGCTTTTCAG
GGGTGGAACTGATCTCGGATCAGCTACCGAGAGGATTACGCTCTTTCCTGTTGGGGCTGACTTTTGGTCTTGTGGCTTCC
CCCTGTAGTACCCCGGTGCTTGCAACATTACTAGCCTGGATCTCAAGTACTCAGGATCCTATTCTGGGCGGTGGTCTGTT
ATTGTCATACACGGCAGGCTATACTGCTCCCCTCATCATTGCAGGAACGTTTACGGCAGCGATCAAGCGGTTTCTCTCTA
TTCGTAAATGGTCTGCTTGGATTACTCCTACCAGTGGCGTTATTTTGGTTGCCTTTGGCGTATTTTCCTTGCTAAATCAT
GTATTGCCTAGCGTTTAA

Upstream 100 bases:

>100_bases
CTGCTAAAAAACAACGACTAAAACAACGCCGAAAACACAGACTTCGTTAAGATCAATAGCGAACACCTGATTGTTAGTTG
CGTCGAAGCAGCTTCTCCTT

Downstream 100 bases:

>100_bases
TCCTGTCGATTTACAACTCCTTGACCCAATTCCATGACCTCTAACCTCGGCCAACCTCAAGCTTTCTTCAAAAAAACGTT
AGTGCCTGTTTTGGCAGATT

Product: cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA

Products: DsbDoxidized; DsbGreduced [C]

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLETLEIQLYHLEQFANSIVSTQLSHLSALSVGIIFLAGLLTSLTPCTLSMLPITVGYIGGYETENRWQAMAQSVWFCLG
LASTLAGLGIGAALLGRVYGQIGVGLAIVVSLVAIIMGLNLLEALPLRLPSFSGVELISDQLPRGLRSFLLGLTFGLVAS
PCSTPVLATLLAWISSTQDPILGGGLLLSYTAGYTAPLIIAGTFTAAIKRFLSIRKWSAWITPTSGVILVAFGVFSLLNH
VLPSV

Sequences:

>Translated_245_residues
MLETLEIQLYHLEQFANSIVSTQLSHLSALSVGIIFLAGLLTSLTPCTLSMLPITVGYIGGYETENRWQAMAQSVWFCLG
LASTLAGLGIGAALLGRVYGQIGVGLAIVVSLVAIIMGLNLLEALPLRLPSFSGVELISDQLPRGLRSFLLGLTFGLVAS
PCSTPVLATLLAWISSTQDPILGGGLLLSYTAGYTAPLIIAGTFTAAIKRFLSIRKWSAWITPTSGVILVAFGVFSLLNH
VLPSV
>Mature_245_residues
MLETLEIQLYHLEQFANSIVSTQLSHLSALSVGIIFLAGLLTSLTPCTLSMLPITVGYIGGYETENRWQAMAQSVWFCLG
LASTLAGLGIGAALLGRVYGQIGVGLAIVVSLVAIIMGLNLLEALPLRLPSFSGVELISDQLPRGLRSFLLGLTFGLVAS
PCSTPVLATLLAWISSTQDPILGGGLLLSYTAGYTAPLIIAGTFTAAIKRFLSIRKWSAWITPTSGVILVAFGVFSLLNH
VLPSV

Specific function: Could be involved in cytochrome c synthesis [H]

COG id: COG0785

COG function: function code O; Cytochrome c biogenesis protein

Gene ontology:
GO:0016020: Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA
GO:0016021: Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA
GO:0017004: Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA
GO:0055114: Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DsbD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003834 [H]

Pfam domain/function: PF02683 DsbD [H]

EC number: 1.8.1.8 [C]

Molecular weight: Translated: 25846; Mature: 25846

Theoretical pI: Translated: 7.44; Mature: 7.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETLEIQLYHLEQFANSIVSTQLSHLSALSVGIIFLAGLLTSLTPCTLSMLPITVGYIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
GYETENRWQAMAQSVWFCLGLASTLAGLGIGAALLGRVYGQIGVGLAIVVSLVAIIMGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEALPLRLPSFSGVELISDQLPRGLRSFLLGLTFGLVASPCSTPVLATLLAWISSTQDP
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
ILGGGLLLSYTAGYTAPLIIAGTFTAAIKRFLSIRKWSAWITPTSGVILVAFGVFSLLNH
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHH
VLPSV
HCCCC
>Mature Secondary Structure
MLETLEIQLYHLEQFANSIVSTQLSHLSALSVGIIFLAGLLTSLTPCTLSMLPITVGYIG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
GYETENRWQAMAQSVWFCLGLASTLAGLGIGAALLGRVYGQIGVGLAIVVSLVAIIMGLN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEALPLRLPSFSGVELISDQLPRGLRSFLLGLTFGLVASPCSTPVLATLLAWISSTQDP
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCC
ILGGGLLLSYTAGYTAPLIIAGTFTAAIKRFLSIRKWSAWITPTSGVILVAFGVFSLLNH
CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHH
VLPSV
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DsbGoxidized; DsbDreduced/thiol:disulfide reductase [C]

Specific reaction: DsbDreduced/thiol:disulfide reductase + DsbCoxidized = DsbDoxidized + DsbCreduced DsbGoxidized + DsbDreduced/thiol:disulfide reductase = DsbGreduced + DsbDoxidized [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]