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The map label for this gene is ccsB

Identifier: 158334972

GI number: 158334972

Start: 1796695

End: 1798065

Strand: Reverse

Name: ccsB

Synonym: AM1_1809

Alternate gene names: 158334972

Gene position: 1798065-1796695 (Counterclockwise)

Preceding gene: 158334973

Following gene: 158334971

Centisome position: 27.65

GC content: 48.58

Gene sequence:

>1371_bases
ATGACCTCTAACCTCGGCCAACCTCAAGCTTTCTTCAAAAAAACGTTAGTGCCTGTTTTGGCAGATTTGCGGTTGGCAAT
TGTATTGCTTCTTGCGATCGCACTGTTTAGCATCTCAGGCACCGTTATTGAGCAAGGCCAATCCCTAGAGTTTTATCAGG
CCAACTATCCTGAAGAACCGGCATTGTTTGGTTTTTTGACTTGGAAAGTTTTGGTGACGATCGGGTTGGATCATGTATAT
GCCACCTGGTGGTTTTTGTCACTTCTGATATTGTTTGGTACCAGCTTGACGGCCTGTACCTTTATGCGGCAGCTTCCGGC
TCTCAAAGCGGCTCGCAGTTGGCAGTTCTATAAGAAGCCTCGTCAGTTTGGGAAACTGGCCCTAAGTACCACCCTTGACC
CGGATCAAAAGCCTTCGCTGCTAAAGGCGTTAGAAAAGAACCGTTACAAGGTTTTTGAAGAAGATCAGAGTATCTATGCC
CGCAAAGGCATTACTGGGCGTATTGGTCCAATCATTGTTCACGCCAGCATGATCTTGATCCTACTCGGTTCCATATGGGG
TTCCCTGACAGGATTTATGGCCCAAGAAATGATACCCAGTGGCACCACTGCCAAGGTTAGCAATATTGTTAAATCTGGCC
CATGGTCCGGGGCACAAATTCCCAGAGATTGGGCGGTGCAGGTGAATCGTTTTTGGATTGATTACACTCCTGAAGGCCAA
ATTGACCAATTTTACTCAGACTTATCGATTGTCGATGAAGACAAGAATGAATTAGATCGGCAAACGATTCATGTGAATCA
ACCCCTTAAACATAAGGGCGTGACCCTCTACCAAGCAGACTGGTCCATTGCTGGAGTTCGGGTGCAGCTCAACAACAGCC
CTGTTTTGCAGCTACCCATGGCCCCCTTAGAAGCAGCGGGTGGCAGAATCTGGGGAACCTGGGTGCCCACAAAACCGGAT
CTCAGTGCAGGGGTGACCTTGCTGACCACAGATTTGCAGGGCACAGTCGTGGTCTATGATGAGTCCGGCAAGCTCGTGTC
AACCGTAAGAACGGGCATGTCGACGGATGTGAATGACATTAGCCTCAAATTAGTGGAACTGGTGGGCAGTACAGGGTTAC
AAATTAAGTCTGACCCTGGCATTCCCTGGATTTATGCTGGATTCGGACTGTTAATGATTGGTGTGATCATGAGTTATGTC
TCTCATTCGCAAATCTGGCTATTAACGGCAGATGATCAACTGTATGTGGGTGGGCGCACGAACCGGGCTTTGTTGACCTT
TGAGCGAGAACTGGTGGAAATGATTGAGAGCTCTGCATCAGATTCTGCGCTCTCCCCATCAACTAATCCCCAACCCCAGG
AAGTTGCCTAG

Upstream 100 bases:

>100_bases
CAGTGGCGTTATTTTGGTTGCCTTTGGCGTATTTTCCTTGCTAAATCATGTATTGCCTAGCGTTTAATCCTGTCGATTTA
CAACTCCTTGACCCAATTCC

Downstream 100 bases:

>100_bases
ACCTAGAGCGTGCAGTCCACTCATTCATGGATCCGCCAGCGTACTTCAGAAATAATCTTGACGACAATGATGGATTGCGA
TTCATGTCCCAACCCCCAAC

Product: cytochrome c biogenesis protein CcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MTSNLGQPQAFFKKTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEPALFGFLTWKVLVTIGLDHVY
ATWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKPRQFGKLALSTTLDPDQKPSLLKALEKNRYKVFEEDQSIYA
RKGITGRIGPIIVHASMILILLGSIWGSLTGFMAQEMIPSGTTAKVSNIVKSGPWSGAQIPRDWAVQVNRFWIDYTPEGQ
IDQFYSDLSIVDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPMAPLEAAGGRIWGTWVPTKPD
LSAGVTLLTTDLQGTVVVYDESGKLVSTVRTGMSTDVNDISLKLVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYV
SHSQIWLLTADDQLYVGGRTNRALLTFERELVEMIESSASDSALSPSTNPQPQEVA

Sequences:

>Translated_456_residues
MTSNLGQPQAFFKKTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEPALFGFLTWKVLVTIGLDHVY
ATWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKPRQFGKLALSTTLDPDQKPSLLKALEKNRYKVFEEDQSIYA
RKGITGRIGPIIVHASMILILLGSIWGSLTGFMAQEMIPSGTTAKVSNIVKSGPWSGAQIPRDWAVQVNRFWIDYTPEGQ
IDQFYSDLSIVDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPMAPLEAAGGRIWGTWVPTKPD
LSAGVTLLTTDLQGTVVVYDESGKLVSTVRTGMSTDVNDISLKLVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYV
SHSQIWLLTADDQLYVGGRTNRALLTFERELVEMIESSASDSALSPSTNPQPQEVA
>Mature_455_residues
TSNLGQPQAFFKKTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEPALFGFLTWKVLVTIGLDHVYA
TWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKPRQFGKLALSTTLDPDQKPSLLKALEKNRYKVFEEDQSIYAR
KGITGRIGPIIVHASMILILLGSIWGSLTGFMAQEMIPSGTTAKVSNIVKSGPWSGAQIPRDWAVQVNRFWIDYTPEGQI
DQFYSDLSIVDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPMAPLEAAGGRIWGTWVPTKPDL
SAGVTLLTTDLQGTVVVYDESGKLVSTVRTGMSTDVNDISLKLVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYVS
HSQIWLLTADDQLYVGGRTNRALLTFERELVEMIESSASDSALSPSTNPQPQEVA

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:
GO:0009579: Cytochrome c biogenesis protein CcsB
GO:0016020: Cytochrome c biogenesis protein CcsB
GO:0016021: Cytochrome c biogenesis protein CcsB
GO:0017004: Cytochrome c biogenesis protein CcsB
GO:0042651: Cytochrome c biogenesis protein CcsB

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCS1_ACAM1 (B0CDA5)

Other databases:

- EMBL:   CP000828
- RefSeq:   YP_001516144.1
- GeneID:   5680625
- GenomeReviews:   CP000828_GR
- KEGG:   amr:AM1_1809
- HOGENOM:   HBG635079
- OMA:   VKCECGH
- ProtClustDB:   CLSK893068
- BioCyc:   AMAR329726:AM1_1809-MONOMER
- HAMAP:   MF_01392
- InterPro:   IPR007816

Pfam domain/function: PF05140 ResB

EC number: NA

Molecular weight: Translated: 50371; Mature: 50240

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd3b2490)-; HASH(0xec01be0)-; HASH(0xd5fd83c)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSNLGQPQAFFKKTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCC
ALFGFLTWKVLVTIGLDHVYATWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RQFGKLALSTTLDPDQKPSLLKALEKNRYKVFEEDQSIYARKGITGRIGPIIVHASMILI
HHHCCEEEECCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHCCCCCCHHHHHHHHHHHHH
LLGSIWGSLTGFMAQEMIPSGTTAKVSNIVKSGPWSGAQIPRDWAVQVNRFWIDYTPEGQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHEEEEEEEEEEECCCCC
IDQFYSDLSIVDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPM
HHHHHHCCHHCCCCHHHHCHHEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCEEEECC
APLEAAGGRIWGTWVPTKPDLSAGVTLLTTDLQGTVVVYDESGKLVSTVRTGMSTDVNDI
CCHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCCHHH
SLKLVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYVSHSQIWLLTADDQLYVGGRT
HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEECCCC
NRALLTFERELVEMIESSASDSALSPSTNPQPQEVA
CCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
TSNLGQPQAFFKKTLVPVLADLRLAIVLLLAIALFSISGTVIEQGQSLEFYQANYPEEP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEEEECCCCCCC
ALFGFLTWKVLVTIGLDHVYATWWFLSLLILFGTSLTACTFMRQLPALKAARSWQFYKKP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RQFGKLALSTTLDPDQKPSLLKALEKNRYKVFEEDQSIYARKGITGRIGPIIVHASMILI
HHHCCEEEECCCCCCCCHHHHHHHHHCCCEEECCCHHHHHHCCCCCCHHHHHHHHHHHHH
LLGSIWGSLTGFMAQEMIPSGTTAKVSNIVKSGPWSGAQIPRDWAVQVNRFWIDYTPEGQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHEEEEEEEEEEECCCCC
IDQFYSDLSIVDEDKNELDRQTIHVNQPLKHKGVTLYQADWSIAGVRVQLNNSPVLQLPM
HHHHHHCCHHCCCCHHHHCHHEEECCCCCCCCCEEEEEECCEEEEEEEEECCCCEEEECC
APLEAAGGRIWGTWVPTKPDLSAGVTLLTTDLQGTVVVYDESGKLVSTVRTGMSTDVNDI
CCHHHCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCCCHHHHHHCCCCCCHHH
SLKLVELVGSTGLQIKSDPGIPWIYAGFGLLMIGVIMSYVSHSQIWLLTADDQLYVGGRT
HHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEECCCC
NRALLTFERELVEMIESSASDSALSPSTNPQPQEVA
CCEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA