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The map label for this gene is ycjN [C]

Identifier: 158334900

GI number: 158334900

Start: 1725334

End: 1726614

Strand: Direct

Name: ycjN [C]

Synonym: AM1_1738

Alternate gene names: 158334900

Gene position: 1725334-1726614 (Clockwise)

Preceding gene: 158334898

Following gene: 158334907

Centisome position: 26.53

GC content: 48.17

Gene sequence:

>1281_bases
ATGATTCAACGAAAAACTTGGCAACGCTTTGGCCTCTTAACCTTACTCGGGATATTCCTGAGTTGGTTAATTAGCTGCAC
ACCAGCCTCCCAAAGTAATGGCAATACCCTGGATTTTTGGACGATGCAGCTCTCGCCCAAATTCGACACCTATTTTGAGC
AGGTTATTGACCAGTTTGAAAAAGAGAATCCAGAGATCAAGGTGAAGTGGACGGATGTGCCCTGGTCGGCCATGCAGAGT
AAAATTCTTGCGGCTGTCGCTGCGAAAACGGCTCCTGATGTCGTCAATCTCAATCCTGACTTTGCCTCTCAGCTAGCCAG
TAAAGGGAGTTGGTTGGACTTAGATGAAGCCATCGGCCAAGCCGATCGCGATCGCTATCTCTCTAATATTTGGGATGCCA
GTTCCTTGAACGGCAAAACCTTTGGCATCCCCTGGTACTTAACGGCCCGGATCGCCATTTACAACAAAGGAATTTTTGAT
GAAGCTGGCATCTCAGAGCCTCCTAAGACCTATGCAGAATTGGCAGCTGCAGCTAAGAAAATCAAAGATAAAACGGGGAA
ATATGCCTTCTTTGTAACCACAGTGCCCACGGATTCTGGAGAGTTAATGGAATCCTTTGTCCAAATGGGGGTCAAGCTAG
TGGATCCCGCAGGTAAGGCCGCCTTTAACTCCCCGGAGGGGAAAGCCGCCTTCCAATATTGGGTGGATCTCTACAAGCAA
AAATTAATCCCCCCCGCAGTACTGACCGAAGGACACAAGCGAGCCGTTGATTTATATCAATCAGGGGAAGTGGCCTTGCT
ATCTTCCAGCCCTCAATTTTTGAATAGTGTTAAAACCAATGCCCCTGACATTGCCAAAAACTCTGTTGCGGCCCCTCAAA
TTACAGGCCCCACGGGCAAAAAAAATGTGGCGGTCATGAACCTGATCATCCCTAAAGATACGGATAAAGCAGAAGCAGCC
CTTAAATTCGCCCTGTTTGTCACCAACCCTGAGAATCAGCTCACCTTTGCTAAAGAAGCTGATGTTCTGCCTTCTACCAC
AGAGTCTCTAGCAAATCCCTATTTCAGCGAAGTCAAAGACGGCGATGATATCTCCCAAGCTCGGGTCGTCAGCGCCCAAC
AAATGGAAGATGCTGAGATATTGATTCCGGCCATGAAGGACATCAAAAAACTGCAGAAAATCCTCTATGAGAATCTGCAG
CAGGCCATGCTCGATAAGAAGTCGGTGGATCAAGCCATCACCGATGCCGAGAAAGCTTGGAATCAAACCGTGGGGGCATA
G

Upstream 100 bases:

>100_bases
ATGCAGCAGCGAATGAGGTATCGGAACAAAGTCACGAGAAAAGGATTCGGATCAGCGTAAACTGTTACTCAATATTTTCT
GACAAGCGATCGCATAACCC

Downstream 100 bases:

>100_bases
GTCTGAAGATAGTGACCTACGAGATATAACGAACCACATAACACATGCATAGAGGATGTCTGAGACTCAGGTCGAAAGGC
ATCCTTCAATGCTTTTTCTA

Product: sugar ABC transporter periplasmic sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MIQRKTWQRFGLLTLLGIFLSWLISCTPASQSNGNTLDFWTMQLSPKFDTYFEQVIDQFEKENPEIKVKWTDVPWSAMQS
KILAAVAAKTAPDVVNLNPDFASQLASKGSWLDLDEAIGQADRDRYLSNIWDASSLNGKTFGIPWYLTARIAIYNKGIFD
EAGISEPPKTYAELAAAAKKIKDKTGKYAFFVTTVPTDSGELMESFVQMGVKLVDPAGKAAFNSPEGKAAFQYWVDLYKQ
KLIPPAVLTEGHKRAVDLYQSGEVALLSSSPQFLNSVKTNAPDIAKNSVAAPQITGPTGKKNVAVMNLIIPKDTDKAEAA
LKFALFVTNPENQLTFAKEADVLPSTTESLANPYFSEVKDGDDISQARVVSAQQMEDAEILIPAMKDIKKLQKILYENLQ
QAMLDKKSVDQAITDAEKAWNQTVGA

Sequences:

>Translated_426_residues
MIQRKTWQRFGLLTLLGIFLSWLISCTPASQSNGNTLDFWTMQLSPKFDTYFEQVIDQFEKENPEIKVKWTDVPWSAMQS
KILAAVAAKTAPDVVNLNPDFASQLASKGSWLDLDEAIGQADRDRYLSNIWDASSLNGKTFGIPWYLTARIAIYNKGIFD
EAGISEPPKTYAELAAAAKKIKDKTGKYAFFVTTVPTDSGELMESFVQMGVKLVDPAGKAAFNSPEGKAAFQYWVDLYKQ
KLIPPAVLTEGHKRAVDLYQSGEVALLSSSPQFLNSVKTNAPDIAKNSVAAPQITGPTGKKNVAVMNLIIPKDTDKAEAA
LKFALFVTNPENQLTFAKEADVLPSTTESLANPYFSEVKDGDDISQARVVSAQQMEDAEILIPAMKDIKKLQKILYENLQ
QAMLDKKSVDQAITDAEKAWNQTVGA
>Mature_426_residues
MIQRKTWQRFGLLTLLGIFLSWLISCTPASQSNGNTLDFWTMQLSPKFDTYFEQVIDQFEKENPEIKVKWTDVPWSAMQS
KILAAVAAKTAPDVVNLNPDFASQLASKGSWLDLDEAIGQADRDRYLSNIWDASSLNGKTFGIPWYLTARIAIYNKGIFD
EAGISEPPKTYAELAAAAKKIKDKTGKYAFFVTTVPTDSGELMESFVQMGVKLVDPAGKAAFNSPEGKAAFQYWVDLYKQ
KLIPPAVLTEGHKRAVDLYQSGEVALLSSSPQFLNSVKTNAPDIAKNSVAAPQITGPTGKKNVAVMNLIIPKDTDKAEAA
LKFALFVTNPENQLTFAKEADVLPSTTESLANPYFSEVKDGDDISQARVVSAQQMEDAEILIPAMKDIKKLQKILYENLQ
QAMLDKKSVDQAITDAEKAWNQTVGA

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46954; Mature: 46954

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQRKTWQRFGLLTLLGIFLSWLISCTPASQSNGNTLDFWTMQLSPKFDTYFEQVIDQFE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHH
KENPEIKVKWTDVPWSAMQSKILAAVAAKTAPDVVNLNPDFASQLASKGSWLDLDEAIGQ
CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCHHHHHCC
ADRDRYLSNIWDASSLNGKTFGIPWYLTARIAIYNKGIFDEAGISEPPKTYAELAAAAKK
CHHHHHHHHHCCCCCCCCCEECCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
IKDKTGKYAFFVTTVPTDSGELMESFVQMGVKLVDPAGKAAFNSPEGKAAFQYWVDLYKQ
HHHCCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
KLIPPAVLTEGHKRAVDLYQSGEVALLSSSPQFLNSVKTNAPDIAKNSVAAPQITGPTGK
HCCCHHHHCCCCHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCC
KNVAVMNLIIPKDTDKAEAALKFALFVTNPENQLTFAKEADVLPSTTESLANPYFSEVKD
CCEEEEEEEECCCCCHHHHEEEEEEEEECCCCCEEEHHHCCCCCCCHHHHCCHHHHHCCC
GDDISQARVVSAQQMEDAEILIPAMKDIKKLQKILYENLQQAMLDKKSVDQAITDAEKAW
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQTVGA
HHHCCC
>Mature Secondary Structure
MIQRKTWQRFGLLTLLGIFLSWLISCTPASQSNGNTLDFWTMQLSPKFDTYFEQVIDQFE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHH
KENPEIKVKWTDVPWSAMQSKILAAVAAKTAPDVVNLNPDFASQLASKGSWLDLDEAIGQ
CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHCCCCCCCHHHHHCC
ADRDRYLSNIWDASSLNGKTFGIPWYLTARIAIYNKGIFDEAGISEPPKTYAELAAAAKK
CHHHHHHHHHCCCCCCCCCEECCCEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHH
IKDKTGKYAFFVTTVPTDSGELMESFVQMGVKLVDPAGKAAFNSPEGKAAFQYWVDLYKQ
HHHCCCCEEEEEEECCCCCHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
KLIPPAVLTEGHKRAVDLYQSGEVALLSSSPQFLNSVKTNAPDIAKNSVAAPQITGPTGK
HCCCHHHHCCCCHHHHHHHCCCCEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCCCCCCC
KNVAVMNLIIPKDTDKAEAALKFALFVTNPENQLTFAKEADVLPSTTESLANPYFSEVKD
CCEEEEEEEECCCCCHHHHEEEEEEEEECCCCCEEEHHHCCCCCCCHHHHCCHHHHHCCC
GDDISQARVVSAQQMEDAEILIPAMKDIKKLQKILYENLQQAMLDKKSVDQAITDAEKAW
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQTVGA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA