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The map label for this gene is yhdX [H]

Identifier: 158334196

GI number: 158334196

Start: 982110

End: 983279

Strand: Direct

Name: yhdX [H]

Synonym: AM1_1014

Alternate gene names: 158334196

Gene position: 982110-983279 (Clockwise)

Preceding gene: 158334195

Following gene: 158334197

Centisome position: 15.1

GC content: 50.51

Gene sequence:

>1170_bases
ATGCCCAAGCTGCACCTGGGACCCAAATGGCGACAACCCCGAATTCGGAACGGGTTGATCCAAGGATTAGTTCTTCTCCT
GATTGGGTTGGCTGTTGTTTACTTTGGTGCCAATCTAGTTCAAAACTTACAGCGCCTGCGTCTTCCTTTTGGATTTGATT
TTTTATTCGCCAAGTCTGGTCCCAGTATCGGTGAAACCCTGATCGAGTATTCACCCACCGATAATATTGCCCGGGCCTTT
GGGGTAGCCCTGCTCAATACCTTGCGGGTGGTGGTTCTGGGAATTGTCTTGGCAACCGTTGTTGGTATTGGCGTTGGGAT
GGCTCGCCTATCGGATAACTGGCTGGTGCGTAAACTGGCAACATTCTATGTCGAGACCTTGCGGAATTTTCCGTTGCTAT
TACAGCTGCTGTTCTGGTATCTGGCGGTTTTTCTGAAGTTACCGACCTTCGAGAATCGCATCCAGCTCCCAGGGCCGATT
ATTCTCAGCAAAAATGGGGTGGCGTTCCCGTGGCTAAAAGGGAATCCCGCTACCCTGCCATGGATATTGGCTTTAGCCAT
CGGCAGTGTGTGTGCTTGTTTACTGTGGCGTTACCTTATTCGGCTGCAAATTGAGCAAGGCCGCATTACCTTTGCCGGGT
TATGGTCATTGCTATTGCTGGTTGGCATAGGGGGAGGAGCCGCACTGATCACCCAGCGTCTTCCGTTTGATGTAAGCCTC
CCCCACGTAGACCAACGGGTGGTGACCGGTGGCCTACAGTTAACGTCCGAATTTTCCGCGTTACTCCTGGGCCTCACCTT
ATATACGGCAGCCTTTATTGCCGAAATTGTCCGAGCGGGAATTCGCTCTGTTTCCATCGGCCAGTCGGAAGCAGCCCGCG
CTTTGGGGCTAAAGCCAACACTCGTCATGCGATTTGTAGTCTTCCCTCAAGCCTTAAGGGTGATTGTGCCGCCACTCACC
AGTCAATATTTGAACTTGGCAAAAAATTCTAGCCTGGCCGTCGCAGTCGGTTACCCCGATATCTACTATGTAGCCTCTGC
CTCCTTAGAAGATACTGGACGCTCAGTTGAAATCGTCCTGCTATTAATGGCGATCTATTTGACGATGAGTTTACTCATTT
CAATTCTGATGAATCTCTACAACCGCAGTATTCAATTGGTTGAGCGATAG

Upstream 100 bases:

>100_bases
AGCACGTTTTCCCATCCCTCCTAAAACGTAGGGTGAAAATTATGCCTGCTATCCTCCCTTGTGTCTGGTAGAGTCATCAT
ACGAATTGCTGGAAACCTTC

Downstream 100 bases:

>100_bases
GGAAATAAGTCTAATGCCGCCGAAATCTCCGACTCCCCTTTCAACATCCTCCCTATTGATCTGGCTGCGCCGCAACCTCT
TCAGCACCTGGTACAACGGT

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPKLHLGPKWRQPRIRNGLIQGLVLLLIGLAVVYFGANLVQNLQRLRLPFGFDFLFAKSGPSIGETLIEYSPTDNIARAF
GVALLNTLRVVVLGIVLATVVGIGVGMARLSDNWLVRKLATFYVETLRNFPLLLQLLFWYLAVFLKLPTFENRIQLPGPI
ILSKNGVAFPWLKGNPATLPWILALAIGSVCACLLWRYLIRLQIEQGRITFAGLWSLLLLVGIGGGAALITQRLPFDVSL
PHVDQRVVTGGLQLTSEFSALLLGLTLYTAAFIAEIVRAGIRSVSIGQSEAARALGLKPTLVMRFVVFPQALRVIVPPLT
SQYLNLAKNSSLAVAVGYPDIYYVASASLEDTGRSVEIVLLLMAIYLTMSLLISILMNLYNRSIQLVER

Sequences:

>Translated_389_residues
MPKLHLGPKWRQPRIRNGLIQGLVLLLIGLAVVYFGANLVQNLQRLRLPFGFDFLFAKSGPSIGETLIEYSPTDNIARAF
GVALLNTLRVVVLGIVLATVVGIGVGMARLSDNWLVRKLATFYVETLRNFPLLLQLLFWYLAVFLKLPTFENRIQLPGPI
ILSKNGVAFPWLKGNPATLPWILALAIGSVCACLLWRYLIRLQIEQGRITFAGLWSLLLLVGIGGGAALITQRLPFDVSL
PHVDQRVVTGGLQLTSEFSALLLGLTLYTAAFIAEIVRAGIRSVSIGQSEAARALGLKPTLVMRFVVFPQALRVIVPPLT
SQYLNLAKNSSLAVAVGYPDIYYVASASLEDTGRSVEIVLLLMAIYLTMSLLISILMNLYNRSIQLVER
>Mature_388_residues
PKLHLGPKWRQPRIRNGLIQGLVLLLIGLAVVYFGANLVQNLQRLRLPFGFDFLFAKSGPSIGETLIEYSPTDNIARAFG
VALLNTLRVVVLGIVLATVVGIGVGMARLSDNWLVRKLATFYVETLRNFPLLLQLLFWYLAVFLKLPTFENRIQLPGPII
LSKNGVAFPWLKGNPATLPWILALAIGSVCACLLWRYLIRLQIEQGRITFAGLWSLLLLVGIGGGAALITQRLPFDVSLP
HVDQRVVTGGLQLTSEFSALLLGLTLYTAAFIAEIVRAGIRSVSIGQSEAARALGLKPTLVMRFVVFPQALRVIVPPLTS
QYLNLAKNSSLAVAVGYPDIYYVASASLEDTGRSVEIVLLLMAIYLTMSLLISILMNLYNRSIQLVER

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=380, Percent_Identity=43.421052631579, Blast_Score=265, Evalue=6e-72,
Organism=Escherichia coli, GI1788226, Length=178, Percent_Identity=33.7078651685393, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786874, Length=129, Percent_Identity=37.984496124031, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1786873, Length=121, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787030, Length=129, Percent_Identity=29.4573643410853, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082239, Length=116, Percent_Identity=31.0344827586207, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42762; Mature: 42631

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKLHLGPKWRQPRIRNGLIQGLVLLLIGLAVVYFGANLVQNLQRLRLPFGFDFLFAKSG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
PSIGETLIEYSPTDNIARAFGVALLNTLRVVVLGIVLATVVGIGVGMARLSDNWLVRKLA
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TFYVETLRNFPLLLQLLFWYLAVFLKLPTFENRIQLPGPIILSKNGVAFPWLKGNPATLP
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEECCCCCHHH
WILALAIGSVCACLLWRYLIRLQIEQGRITFAGLWSLLLLVGIGGGAALITQRLPFDVSL
HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
PHVDQRVVTGGLQLTSEFSALLLGLTLYTAAFIAEIVRAGIRSVSIGQSEAARALGLKPT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
LVMRFVVFPQALRVIVPPLTSQYLNLAKNSSLAVAVGYPDIYYVASASLEDTGRSVEIVL
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHCCCHHHHHH
LLMAIYLTMSLLISILMNLYNRSIQLVER
HHHHHHHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure 
PKLHLGPKWRQPRIRNGLIQGLVLLLIGLAVVYFGANLVQNLQRLRLPFGFDFLFAKSG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCC
PSIGETLIEYSPTDNIARAFGVALLNTLRVVVLGIVLATVVGIGVGMARLSDNWLVRKLA
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
TFYVETLRNFPLLLQLLFWYLAVFLKLPTFENRIQLPGPIILSKNGVAFPWLKGNPATLP
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCEECCCCCHHH
WILALAIGSVCACLLWRYLIRLQIEQGRITFAGLWSLLLLVGIGGGAALITQRLPFDVSL
HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC
PHVDQRVVTGGLQLTSEFSALLLGLTLYTAAFIAEIVRAGIRSVSIGQSEAARALGLKPT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHH
LVMRFVVFPQALRVIVPPLTSQYLNLAKNSSLAVAVGYPDIYYVASASLEDTGRSVEIVL
HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHCCCHHHHHH
LLMAIYLTMSLLISILMNLYNRSIQLVER
HHHHHHHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]