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The map label for this gene is omp85 [H]

Identifier: 158333779

GI number: 158333779

Start: 573752

End: 576199

Strand: Reverse

Name: omp85 [H]

Synonym: AM1_0587

Alternate gene names: 158333779

Gene position: 576199-573752 (Counterclockwise)

Preceding gene: 158333780

Following gene: 158333778

Centisome position: 8.86

GC content: 54.62

Gene sequence:

>2448_bases
GTGTGTGAAGTGACTCAATCTCCATCGATCAAGATTCTCAGTCTTCCACCGATTCTCGGTGCAACCGTGATCACGGCGAC
CCTGCTGGGCATTGCACCCGCCCAAGCCAAAGACCAGCCTTCTTCGGACAGAGATAATCGCCAAGAACAGATCAGAGTAT
CCTCCCCCCCTGCCCCCTCAATACACCTTGGGCAGCTGCCGACAGATGACGCCCCTAGTCAAACTGCCCCGGTTTTTCCC
CTCCCTGCTCAACCCGATCAACCCTCCACGCCAGCGGTAGAAACCCCGTCCACATCGGAAGAGAAGACTGATCCAGACGA
GGCCACCCCAAATACGGGAGCACCAGGAGATCCCCCCGCAGCAGACGAGATCGCCCCAGCCCCCGGAGCCCCCTCCGCAG
CAGATGACGCCGCTCCGGCCCCAGGAGATGTACCAGCGACGGACGAAGCGGCCCCAGATACAGGTGCCCCAGGAGATGTA
CCAGCCGAAACGCCCTCTGCCGATGACGTCCCCCCCACAGAATCGCCAGCGGCCCCCAATCCTGGACTTCCGGTTCCCGG
CGGCGATATTCCCAGCGGCAATCCTGGCGACACGCAAACCCCGTCTCCCGATAGTTCGGTAGAATCTCCGGGTTCCCCTC
CTCAACCCCCCACAGAAACGGCTGAACCACCCGCAGCCCCTGAACCAGAGGTTTTGGTCTCAGAAGTCTTAGTTGAAGGG
GTCGATGGCGATTTAGCGATTAATGCCTATGAAGCCATTAGTACCCGACCAGGCCAAACAACAACGCGATCGCAAATTCA
ATCCGACATTAATGCCATTTTCGGCACTGGCTTTTTTAGCAATGTTAGGGCAGAGCCCAGTGATACACCCCTTGGCGTCA
GAGTCACCTTCTTTGTCCAGCCCAATCCCACCCTCCAATCCGTGCAGGTGGCTGGCAATCAGGTTCTCACCCAAGAGAAA
GTGGATGAGATTTTCCAATCCCAATACGGCAAAATCCTTAACCTTCGGGATCTCCAAGCAGGGGTGACTCGGGTCAATAA
ATATTATCAAGATGAAGGTTTCGTTCTCGGTCAAGTGGTGGGCGTTCCCCAAGTGGATCCCGATGGCACTGTCACCCTCC
AGGTGGCAGAAGGGGTCGTTGAAGATATCGATGTTCGTTACATTAACGAAGATGGAGAGCCCACCAAAGGCAAGACTCGG
AAATTTATTATTACCCGAGAAATGCGCACCGAGCCGGGTTTGCCTTTAAACCGCAACAAGCTGCAAACCGACCTACAGCG
CGTGTTTGGGTTGGGGCTGTTTGAAGATGTCAAAGTGGCCCTCGAACCGGGTCAGGATCCACGGAAAGTCGTGGTGAATC
TAAATGTGCAGGAACGAAGCACGGCCAGCTTCTCCGCTGGTGCTGGTTTTAGCTCTCGAAGTGGTTTCTTTGGCACCGGC
TCCTTTACTCAGAATAATTTAGGGGGCAACAACCAAACCCTGAGCGTCCAAGCCCAGGCTGGAACCCGAGAATTCTTATT
TGATGCCGGATTTTCGGATCCATGGATTGCCGGAGATCCCAACCATTCCTCCTACAGCATCAACATCTTCAACCGCCTGA
CCCTTCCCCTCGTGTTTGATGAAGGCCCGATTGAAGTCGATCTGCCCAATGGGGATACTCCCAGGGTCAACCGATTGGGG
ATTAGTGGTGTGTTTAACCGCCCCTTCACGACAGACCTAGATAACCTCAGACAAGCCTGGACTGGATCGATTGGCTTCCG
ATACCAACGGATTTCAATTCGCGACAGTGACTTCTCAATTTCTCCTGTGGACGAATTGGGCAATGCCTTAAGTTTTAGCG
GGACGGGCAATGATGACCTACTCACCGTCCAACTCGGCATTGGCCGTGATTTACGGGATGATCCAGCCGACCCCACCAAG
GGATATGCCCTACGATTTGGCCTAGAACAATCGGCTCCCATTGGCTCTGGCAGCATCCTATTAACGCGACTCCGGGGGAG
CTTTAGCTATTTCGTCCCTATCAAACTCACCAACTTTACCGAAGGTCCCCAAGCCTTGGCCTTTAATGTCCAAGCTGGAA
CGGTCCTAGGGGACCTACCTCCCTATGAAGCCTTCTCCCTCGGGGGCAGCTCTTCGGTCCGGGGCTACGGAGAAGGAGAT
TTGGGCAGTGGTCGCAGCTTTATGCAGGCCACCGCTGAATATCGTTTTCCGTTGATTAACTTCTTGGGGGGTGTGGGTGC
TGTCCTCTTCTTTGATGTGGGGAGTAACCTGGGAACTCAAAGTAATGTTCCGGGTCAACCTGGTATTGTTCGCGGCAAGC
CTGGGGTTGGCTTTGGCTACGGCATTGGGGTACGCGTCAAAACGCCTATTGGTCCAGTCCGACTGGATTATGGCATCAAT
GACGATGGGGACAATCAATTCCACTTTGGCTTTGGTCAACGATTCTAA

Upstream 100 bases:

>100_bases
CCAGGACATATACGTCCCCTAGCTTGGTGCGATAAAATACTCCCTGTTTTGGATTTTTTTAAGGTTTCTCTTAGTACTCA
TTGTTGTTCAGTTGCATGTG

Downstream 100 bases:

>100_bases
GGATCCAGTGTTTATCTTGAGGCAAGCGTGGATGCCAGTAAGACCGAGGGGTTAAAGGGTTTTGAAGATGCGATCGCATC
TCCTTATCAACACACCCTAA

Product: surface antigen variable number

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 815; Mature: 815

Protein sequence:

>815_residues
MCEVTQSPSIKILSLPPILGATVITATLLGIAPAQAKDQPSSDRDNRQEQIRVSSPPAPSIHLGQLPTDDAPSQTAPVFP
LPAQPDQPSTPAVETPSTSEEKTDPDEATPNTGAPGDPPAADEIAPAPGAPSAADDAAPAPGDVPATDEAAPDTGAPGDV
PAETPSADDVPPTESPAAPNPGLPVPGGDIPSGNPGDTQTPSPDSSVESPGSPPQPPTETAEPPAAPEPEVLVSEVLVEG
VDGDLAINAYEAISTRPGQTTTRSQIQSDINAIFGTGFFSNVRAEPSDTPLGVRVTFFVQPNPTLQSVQVAGNQVLTQEK
VDEIFQSQYGKILNLRDLQAGVTRVNKYYQDEGFVLGQVVGVPQVDPDGTVTLQVAEGVVEDIDVRYINEDGEPTKGKTR
KFIITREMRTEPGLPLNRNKLQTDLQRVFGLGLFEDVKVALEPGQDPRKVVVNLNVQERSTASFSAGAGFSSRSGFFGTG
SFTQNNLGGNNQTLSVQAQAGTREFLFDAGFSDPWIAGDPNHSSYSINIFNRLTLPLVFDEGPIEVDLPNGDTPRVNRLG
ISGVFNRPFTTDLDNLRQAWTGSIGFRYQRISIRDSDFSISPVDELGNALSFSGTGNDDLLTVQLGIGRDLRDDPADPTK
GYALRFGLEQSAPIGSGSILLTRLRGSFSYFVPIKLTNFTEGPQALAFNVQAGTVLGDLPPYEAFSLGGSSSVRGYGEGD
LGSGRSFMQATAEYRFPLINFLGGVGAVLFFDVGSNLGTQSNVPGQPGIVRGKPGVGFGYGIGVRVKTPIGPVRLDYGIN
DDGDNQFHFGFGQRF

Sequences:

>Translated_815_residues
MCEVTQSPSIKILSLPPILGATVITATLLGIAPAQAKDQPSSDRDNRQEQIRVSSPPAPSIHLGQLPTDDAPSQTAPVFP
LPAQPDQPSTPAVETPSTSEEKTDPDEATPNTGAPGDPPAADEIAPAPGAPSAADDAAPAPGDVPATDEAAPDTGAPGDV
PAETPSADDVPPTESPAAPNPGLPVPGGDIPSGNPGDTQTPSPDSSVESPGSPPQPPTETAEPPAAPEPEVLVSEVLVEG
VDGDLAINAYEAISTRPGQTTTRSQIQSDINAIFGTGFFSNVRAEPSDTPLGVRVTFFVQPNPTLQSVQVAGNQVLTQEK
VDEIFQSQYGKILNLRDLQAGVTRVNKYYQDEGFVLGQVVGVPQVDPDGTVTLQVAEGVVEDIDVRYINEDGEPTKGKTR
KFIITREMRTEPGLPLNRNKLQTDLQRVFGLGLFEDVKVALEPGQDPRKVVVNLNVQERSTASFSAGAGFSSRSGFFGTG
SFTQNNLGGNNQTLSVQAQAGTREFLFDAGFSDPWIAGDPNHSSYSINIFNRLTLPLVFDEGPIEVDLPNGDTPRVNRLG
ISGVFNRPFTTDLDNLRQAWTGSIGFRYQRISIRDSDFSISPVDELGNALSFSGTGNDDLLTVQLGIGRDLRDDPADPTK
GYALRFGLEQSAPIGSGSILLTRLRGSFSYFVPIKLTNFTEGPQALAFNVQAGTVLGDLPPYEAFSLGGSSSVRGYGEGD
LGSGRSFMQATAEYRFPLINFLGGVGAVLFFDVGSNLGTQSNVPGQPGIVRGKPGVGFGYGIGVRVKTPIGPVRLDYGIN
DDGDNQFHFGFGQRF
>Mature_815_residues
MCEVTQSPSIKILSLPPILGATVITATLLGIAPAQAKDQPSSDRDNRQEQIRVSSPPAPSIHLGQLPTDDAPSQTAPVFP
LPAQPDQPSTPAVETPSTSEEKTDPDEATPNTGAPGDPPAADEIAPAPGAPSAADDAAPAPGDVPATDEAAPDTGAPGDV
PAETPSADDVPPTESPAAPNPGLPVPGGDIPSGNPGDTQTPSPDSSVESPGSPPQPPTETAEPPAAPEPEVLVSEVLVEG
VDGDLAINAYEAISTRPGQTTTRSQIQSDINAIFGTGFFSNVRAEPSDTPLGVRVTFFVQPNPTLQSVQVAGNQVLTQEK
VDEIFQSQYGKILNLRDLQAGVTRVNKYYQDEGFVLGQVVGVPQVDPDGTVTLQVAEGVVEDIDVRYINEDGEPTKGKTR
KFIITREMRTEPGLPLNRNKLQTDLQRVFGLGLFEDVKVALEPGQDPRKVVVNLNVQERSTASFSAGAGFSSRSGFFGTG
SFTQNNLGGNNQTLSVQAQAGTREFLFDAGFSDPWIAGDPNHSSYSINIFNRLTLPLVFDEGPIEVDLPNGDTPRVNRLG
ISGVFNRPFTTDLDNLRQAWTGSIGFRYQRISIRDSDFSISPVDELGNALSFSGTGNDDLLTVQLGIGRDLRDDPADPTK
GYALRFGLEQSAPIGSGSILLTRLRGSFSYFVPIKLTNFTEGPQALAFNVQAGTVLGDLPPYEAFSLGGSSSVRGYGEGD
LGSGRSFMQATAEYRFPLINFLGGVGAVLFFDVGSNLGTQSNVPGQPGIVRGKPGVGFGYGIGVRVKTPIGPVRLDYGIN
DDGDNQFHFGFGQRF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

None

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85917; Mature: 85917

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEVTQSPSIKILSLPPILGATVITATLLGIAPAQAKDQPSSDRDNRQEQIRVSSPPAPS
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEECCCCCCC
IHLGQLPTDDAPSQTAPVFPLPAQPDQPSTPAVETPSTSEEKTDPDEATPNTGAPGDPPA
EEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ADEIAPAPGAPSAADDAAPAPGDVPATDEAAPDTGAPGDVPAETPSADDVPPTESPAAPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGLPVPGGDIPSGNPGDTQTPSPDSSVESPGSPPQPPTETAEPPAAPEPEVLVSEVLVEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
VDGDLAINAYEAISTRPGQTTTRSQIQSDINAIFGTGFFSNVRAEPSDTPLGVRVTFFVQ
CCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEEEEC
PNPTLQSVQVAGNQVLTQEKVDEIFQSQYGKILNLRDLQAGVTRVNKYYQDEGFVLGQVV
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
GVPQVDPDGTVTLQVAEGVVEDIDVRYINEDGEPTKGKTRKFIITREMRTEPGLPLNRNK
CCCCCCCCCCEEEEECCCCHHCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHH
LQTDLQRVFGLGLFEDVKVALEPGQDPRKVVVNLNVQERSTASFSAGAGFSSRSGFFGTG
HHHHHHHHHCCCCHHCCCEEECCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCEECC
SFTQNNLGGNNQTLSVQAQAGTREFLFDAGFSDPWIAGDPNHSSYSINIFNRLTLPLVFD
CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEC
EGPIEVDLPNGDTPRVNRLGISGVFNRPFTTDLDNLRQAWTGSIGFRYQRISIRDSDFSI
CCCEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCC
SPVDELGNALSFSGTGNDDLLTVQLGIGRDLRDDPADPTKGYALRFGLEQSAPIGSGSIL
CCHHHHCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
LTRLRGSFSYFVPIKLTNFTEGPQALAFNVQAGTVLGDLPPYEAFSLGGSSSVRGYGEGD
EEEECCCEEEEEEEEEECCCCCCCEEEEEEECCCEECCCCCCHHEECCCCCCCCCCCCCC
LGSGRSFMQATAEYRFPLINFLGGVGAVLFFDVGSNLGTQSNVPGQPGIVRGKPGVGFGY
CCCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCE
GIGVRVKTPIGPVRLDYGINDDGDNQFHFGFGQRF
EEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCC
>Mature Secondary Structure
MCEVTQSPSIKILSLPPILGATVITATLLGIAPAQAKDQPSSDRDNRQEQIRVSSPPAPS
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEECCCCCCC
IHLGQLPTDDAPSQTAPVFPLPAQPDQPSTPAVETPSTSEEKTDPDEATPNTGAPGDPPA
EEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ADEIAPAPGAPSAADDAAPAPGDVPATDEAAPDTGAPGDVPAETPSADDVPPTESPAAPN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGLPVPGGDIPSGNPGDTQTPSPDSSVESPGSPPQPPTETAEPPAAPEPEVLVSEVLVEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC
VDGDLAINAYEAISTRPGQTTTRSQIQSDINAIFGTGFFSNVRAEPSDTPLGVRVTFFVQ
CCCCEEEEEHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCEEEEEEEEC
PNPTLQSVQVAGNQVLTQEKVDEIFQSQYGKILNLRDLQAGVTRVNKYYQDEGFVLGQVV
CCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE
GVPQVDPDGTVTLQVAEGVVEDIDVRYINEDGEPTKGKTRKFIITREMRTEPGLPLNRNK
CCCCCCCCCCEEEEECCCCHHCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCCCCCHHH
LQTDLQRVFGLGLFEDVKVALEPGQDPRKVVVNLNVQERSTASFSAGAGFSSRSGFFGTG
HHHHHHHHHCCCCHHCCCEEECCCCCCEEEEEEECCHHCCCCCCCCCCCCCCCCCCEECC
SFTQNNLGGNNQTLSVQAQAGTREFLFDAGFSDPWIAGDPNHSSYSINIFNRLTLPLVFD
CCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEC
EGPIEVDLPNGDTPRVNRLGISGVFNRPFTTDLDNLRQAWTGSIGFRYQRISIRDSDFSI
CCCEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCC
SPVDELGNALSFSGTGNDDLLTVQLGIGRDLRDDPADPTKGYALRFGLEQSAPIGSGSIL
CCHHHHCCEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
LTRLRGSFSYFVPIKLTNFTEGPQALAFNVQAGTVLGDLPPYEAFSLGGSSSVRGYGEGD
EEEECCCEEEEEEEEEECCCCCCCEEEEEEECCCEECCCCCCHHEECCCCCCCCCCCCCC
LGSGRSFMQATAEYRFPLINFLGGVGAVLFFDVGSNLGTQSNVPGQPGIVRGKPGVGFGY
CCCCHHHHHHHHHHCCHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCE
GIGVRVKTPIGPVRLDYGINDDGDNQFHFGFGQRF
EEEEEEECCCCCEEEECCCCCCCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]