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The map label for this gene is yddU [C]

Identifier: 158333740

GI number: 158333740

Start: 530576

End: 532939

Strand: Reverse

Name: yddU [C]

Synonym: AM1_0548

Alternate gene names: 158333740

Gene position: 532939-530576 (Counterclockwise)

Preceding gene: 158333741

Following gene: 158333739

Centisome position: 8.19

GC content: 48.1

Gene sequence:

>2364_bases
ATGAATGACTTTGCGACAAATCCTCTAGATAGACAGTCAGAACTCACTGAACTAGGGCAGAAGGCGTTGTCCGGGTTTAG
CTTAACTGACTTGTACCTGGATGCGATCGCACTAATGAGTCACCACTTGCCGATCTCAGACTGTAGTTTGTGGCAAGTCC
TCTCTGATAGCAACACTCTGCGGTTAGTAGCGAAACAAAAAGCGTCCCTCCTAGGGGACTCCACTGATATCGATAGCCGA
GACTATCCGTGGTTACAGACATTGATGCAAACGGGGCAAACAGCCGTTATTGCCAGGCAATCCGAACAACTCCCCCTGAC
ACAACCCCATGGAATAAGCGGCCTTTGTATTCCGATTCCTGGGCCAGATCGTCCCCTGGGATTACTGGAGATTTTGACCC
CCGACCCTCAGAATTGGAATAAAGAGGATCGCAATTTTGTTAACTGTGTGGCCCAGGTATTAGCAACAGCCATTCAGCGC
AAACGTTCAGAAATGCTGCTGCAAACCCAAACCCAAATTTTGGAAAATGTAGCAACGGGGCAAGGTCTAGATGCGATTCT
CAACAGTTTGTGTCTATTGATTGAGAGTCAGTCTCCAGGGACGGTCTGTTCTATCCTTTTACGGGATGCTCATCAACCGG
AACTACGCATGGGAGCAGGTCCCAGTTTGTCCTCGGAAGTGGCCGCTGCCTTTGATCATTTAATAATTGCCGAAAATGCG
GGCTCCTGTGGGACTGCCGCCTTTCGTGGCCAGGCTGTTTATGTAGAAGACACGCAACGCGATCCCGTCTGGGTGGACTT
TCGAGAATTTGCCCAACAACATAATATTCTTGCCTGTTGGTCAACCCCTTTCTTCTCACAGTCTGGAGATCTATTAGGAA
CCTTTGCCTTATCTCATCAAGTTCCCTGTTCCCCCACCGCTCATCATCTCAACATCATTAAAACCGCCACCCATTTGGCG
AGTATTGCGATGGAGGGACATCGGACGGCTGAGCAATTAAAACAAAAGGCGCTATTTGATAACCTGACAGGTTTACCTAG
CCGAGACTATTTCTATGAGCAGCTTCAACGGAAGTTACAACAGGTTCAGCGCCAGCAATTAGAGGGATACTCTCGTCAGG
CAGAGCTTTGCCATTTTGCCATTTTGTTTCTGGATGTCGATCACTTCAAGCTTGTCAATGACAGCTTGGGGCATAGCGTG
GGGGATCAGCTTCTTGTTGCGATTGCCCAACAGCTTAAGGAGAGTTTGCGTCCTCAGGATTTGCTGGCTCGCTTGGGAGG
AGATGAGTTTGCCATTCTCCTGGATGGAGTCGTCAATCATCAACAGGCCCATAAGATTGTTCAACGTATCCAGCGGTCCC
TGGCTAAGCCCCTAAAGCTCAATCAGCAAGAAGTGTTTACTTCAGTCAGTATTGGGATTACCCACTCCACCAGCCTGTAT
CAACATCCTGAAGAACTACTGCGAGATGCAGATACGGCCATGTATCGTGCCAAAGCCCACGGTCGCGGGGGGTATGTAGT
CTTCGATGAGACCATGCATAAGCAAGTTCGCTCTCGCTTATGGTTAGGCAATAGTCTTAGATATGCGGTCAAAGCGATTG
AACAAGGACAGAATCCCTTTCTATTGCAGTATCAGCCCATTTTCTGTTTGCGGCAACAGCGGCTGATCGGTTTTGAAGCG
CTATTGCGATGGCATCATCCCCAACAAGGCCTGATCTCCCCCGAGAAGTTTATTCCTGTGGCTGAGGAAACGGGGCTGAT
TATTCCGCTGGGGCAGTGGGTTTTAAAAGCTGCTTGTCAACAACTCGCGGTATGGGAACAGGAATTTTCCGTACCGTTAA
CCATGAGTATTAACGTGTCGAGTCAACAGTTTCTGCAACCTAATTTCGTCCAGTCTGTTGAATCTTTAATGCAGTCGCAC
CAGCTGGCTGGTCACCATCTCAAACTGGAAATTACCGAAACGGTGTTAATGGAGTCCACTCACTACGTCACCGATCGACT
AGAGCAATTGCAAAACTTAGGAATTTCCCTCAGTTTGGATGATTTTGGCACCGGATATTCATCCTTGAATTATCTGTATA
ACTTGCCCATTAATACCCTCAAAATCGATCGATCGTTTGTTTGGGGCATTGGCCAAGGGCAAGATCAAATTGTCAAAACC
ATTATTGCTCTTGCCCATGGCCTAGAGATGAATGTTGTGGCAGAAGGGATTGAAACGATAGAACAAATGCAATATCTCCA
CACCTTAGGGTGTGAGCTTGGACAAGGCTATTGGTTTGCTCGTCCTCTTCAACCGGAGGCAGCCCAACAGGTTATTGCTA
CCCTGTCTAGTCCCATGAGCTTGTCTCTACCGATTGCAGAATAA

Upstream 100 bases:

>100_bases
TACTGCCACAAATTGGGTGGTGTATGTCCAACCTTAGTTTTATGAACCCTTGTGATCCAACTGCATATCTAACAGTTCCC
ACATTTGAATCGTTGGTTTT

Downstream 100 bases:

>100_bases
GCAGTACTTCCATGCCCTTTTGGTCCACGCCTAAAACCTCTCTAAACCAGCGTCTTCGGCTGGGTTTAGGGACCATGCTT
GTGCCCTTACTGATGTTAGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MNDFATNPLDRQSELTELGQKALSGFSLTDLYLDAIALMSHHLPISDCSLWQVLSDSNTLRLVAKQKASLLGDSTDIDSR
DYPWLQTLMQTGQTAVIARQSEQLPLTQPHGISGLCIPIPGPDRPLGLLEILTPDPQNWNKEDRNFVNCVAQVLATAIQR
KRSEMLLQTQTQILENVATGQGLDAILNSLCLLIESQSPGTVCSILLRDAHQPELRMGAGPSLSSEVAAAFDHLIIAENA
GSCGTAAFRGQAVYVEDTQRDPVWVDFREFAQQHNILACWSTPFFSQSGDLLGTFALSHQVPCSPTAHHLNIIKTATHLA
SIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQQVQRQQLEGYSRQAELCHFAILFLDVDHFKLVNDSLGHSV
GDQLLVAIAQQLKESLRPQDLLARLGGDEFAILLDGVVNHQQAHKIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLY
QHPEELLRDADTAMYRAKAHGRGGYVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPFLLQYQPIFCLRQQRLIGFEA
LLRWHHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQQLAVWEQEFSVPLTMSINVSSQQFLQPNFVQSVESLMQSH
QLAGHHLKLEITETVLMESTHYVTDRLEQLQNLGISLSLDDFGTGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETIEQMQYLHTLGCELGQGYWFARPLQPEAAQQVIATLSSPMSLSLPIAE

Sequences:

>Translated_787_residues
MNDFATNPLDRQSELTELGQKALSGFSLTDLYLDAIALMSHHLPISDCSLWQVLSDSNTLRLVAKQKASLLGDSTDIDSR
DYPWLQTLMQTGQTAVIARQSEQLPLTQPHGISGLCIPIPGPDRPLGLLEILTPDPQNWNKEDRNFVNCVAQVLATAIQR
KRSEMLLQTQTQILENVATGQGLDAILNSLCLLIESQSPGTVCSILLRDAHQPELRMGAGPSLSSEVAAAFDHLIIAENA
GSCGTAAFRGQAVYVEDTQRDPVWVDFREFAQQHNILACWSTPFFSQSGDLLGTFALSHQVPCSPTAHHLNIIKTATHLA
SIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQQVQRQQLEGYSRQAELCHFAILFLDVDHFKLVNDSLGHSV
GDQLLVAIAQQLKESLRPQDLLARLGGDEFAILLDGVVNHQQAHKIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLY
QHPEELLRDADTAMYRAKAHGRGGYVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPFLLQYQPIFCLRQQRLIGFEA
LLRWHHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQQLAVWEQEFSVPLTMSINVSSQQFLQPNFVQSVESLMQSH
QLAGHHLKLEITETVLMESTHYVTDRLEQLQNLGISLSLDDFGTGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETIEQMQYLHTLGCELGQGYWFARPLQPEAAQQVIATLSSPMSLSLPIAE
>Mature_787_residues
MNDFATNPLDRQSELTELGQKALSGFSLTDLYLDAIALMSHHLPISDCSLWQVLSDSNTLRLVAKQKASLLGDSTDIDSR
DYPWLQTLMQTGQTAVIARQSEQLPLTQPHGISGLCIPIPGPDRPLGLLEILTPDPQNWNKEDRNFVNCVAQVLATAIQR
KRSEMLLQTQTQILENVATGQGLDAILNSLCLLIESQSPGTVCSILLRDAHQPELRMGAGPSLSSEVAAAFDHLIIAENA
GSCGTAAFRGQAVYVEDTQRDPVWVDFREFAQQHNILACWSTPFFSQSGDLLGTFALSHQVPCSPTAHHLNIIKTATHLA
SIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQQVQRQQLEGYSRQAELCHFAILFLDVDHFKLVNDSLGHSV
GDQLLVAIAQQLKESLRPQDLLARLGGDEFAILLDGVVNHQQAHKIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLY
QHPEELLRDADTAMYRAKAHGRGGYVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPFLLQYQPIFCLRQQRLIGFEA
LLRWHHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQQLAVWEQEFSVPLTMSINVSSQQFLQPNFVQSVESLMQSH
QLAGHHLKLEITETVLMESTHYVTDRLEQLQNLGISLSLDDFGTGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKT
IIALAHGLEMNVVAEGIETIEQMQYLHTLGCELGQGYWFARPLQPEAAQQVIATLSSPMSLSLPIAE

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=509, Percent_Identity=31.434184675835, Blast_Score=264, Evalue=2e-71,
Organism=Escherichia coli, GI1787541, Length=441, Percent_Identity=34.4671201814059, Blast_Score=263, Evalue=4e-71,
Organism=Escherichia coli, GI226510982, Length=445, Percent_Identity=28.9887640449438, Blast_Score=179, Evalue=6e-46,
Organism=Escherichia coli, GI1787055, Length=273, Percent_Identity=32.2344322344322, Blast_Score=156, Evalue=4e-39,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=36.864406779661, Blast_Score=154, Evalue=3e-38,
Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=35.6846473029046, Blast_Score=146, Evalue=6e-36,
Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=37.3493975903614, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI1786507, Length=221, Percent_Identity=34.841628959276, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=31.8181818181818, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081743, Length=225, Percent_Identity=32.8888888888889, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1788849, Length=268, Percent_Identity=33.5820895522388, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787262, Length=175, Percent_Identity=34.2857142857143, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=32.8042328042328, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=31.0344827586207, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=30.8988764044944, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1788381, Length=186, Percent_Identity=36.0215053763441, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=36.3128491620112, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788085, Length=180, Percent_Identity=29.4444444444444, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI87082007, Length=185, Percent_Identity=32.972972972973, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI145693134, Length=169, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1788956, Length=177, Percent_Identity=32.7683615819209, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081977, Length=254, Percent_Identity=25.5905511811024, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787816, Length=182, Percent_Identity=29.1208791208791, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=142, Percent_Identity=31.6901408450704, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 87822; Mature: 87822

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDFATNPLDRQSELTELGQKALSGFSLTDLYLDAIALMSHHLPISDCSLWQVLSDSNTL
CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCE
RLVAKQKASLLGDSTDIDSRDYPWLQTLMQTGQTAVIARQSEQLPLTQPHGISGLCIPIP
EEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC
GPDRPLGLLEILTPDPQNWNKEDRNFVNCVAQVLATAIQRKRSEMLLQTQTQILENVATG
CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QGLDAILNSLCLLIESQSPGTVCSILLRDAHQPELRMGAGPSLSSEVAAAFDHLIIAENA
CCHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCC
GSCGTAAFRGQAVYVEDTQRDPVWVDFREFAQQHNILACWSTPFFSQSGDLLGTFALSHQ
CCCCCHHHCCCEEEEECCCCCCEEECHHHHHHHCCEEEEECCCCCCCCCCEEEEEHHCCC
VPCSPTAHHLNIIKTATHLASIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQ
CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QVQRQQLEGYSRQAELCHFAILFLDVDHFKLVNDSLGHSVGDQLLVAIAQQLKESLRPQD
HHHHHHHHCCCHHHHHHHHHHHEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHH
LLARLGGDEFAILLDGVVNHQQAHKIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLY
HHHHCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEEECCHHH
QHPEELLRDADTAMYRAKAHGRGGYVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPF
CCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE
LLQYQPIFCLRQQRLIGFEALLRWHHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQ
EEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHH
QLAVWEQEFSVPLTMSINVSSQQFLQPNFVQSVESLMQSHQLAGHHLKLEITETVLMEST
HHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
HYVTDRLEQLQNLGISLSLDDFGTGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKT
HHHHHHHHHHHHCCCEEEECCCCCCHHHCCCEEECCCCEEEECCCEEECCCCCHHHHHHH
IIALAHGLEMNVVAEGIETIEQMQYLHTLGCELGQGYWFARPLQPEAAQQVIATLSSPMS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCE
LSLPIAE
EECCCCC
>Mature Secondary Structure
MNDFATNPLDRQSELTELGQKALSGFSLTDLYLDAIALMSHHLPISDCSLWQVLSDSNTL
CCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCE
RLVAKQKASLLGDSTDIDSRDYPWLQTLMQTGQTAVIARQSEQLPLTQPHGISGLCIPIP
EEHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECC
GPDRPLGLLEILTPDPQNWNKEDRNFVNCVAQVLATAIQRKRSEMLLQTQTQILENVATG
CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QGLDAILNSLCLLIESQSPGTVCSILLRDAHQPELRMGAGPSLSSEVAAAFDHLIIAENA
CCHHHHHHHHHHEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHEEEECCC
GSCGTAAFRGQAVYVEDTQRDPVWVDFREFAQQHNILACWSTPFFSQSGDLLGTFALSHQ
CCCCCHHHCCCEEEEECCCCCCEEECHHHHHHHCCEEEEECCCCCCCCCCEEEEEHHCCC
VPCSPTAHHLNIIKTATHLASIAMEGHRTAEQLKQKALFDNLTGLPSRDYFYEQLQRKLQ
CCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QVQRQQLEGYSRQAELCHFAILFLDVDHFKLVNDSLGHSVGDQLLVAIAQQLKESLRPQD
HHHHHHHHCCCHHHHHHHHHHHEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHH
LLARLGGDEFAILLDGVVNHQQAHKIVQRIQRSLAKPLKLNQQEVFTSVSIGITHSTSLY
HHHHCCCCCEEEEHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHEEEEEEECCHHH
QHPEELLRDADTAMYRAKAHGRGGYVVFDETMHKQVRSRLWLGNSLRYAVKAIEQGQNPF
CCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCE
LLQYQPIFCLRQQRLIGFEALLRWHHPQQGLISPEKFIPVAEETGLIIPLGQWVLKAACQ
EEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCEEEEHHHHHHHHHHH
QLAVWEQEFSVPLTMSINVSSQQFLQPNFVQSVESLMQSHQLAGHHLKLEITETVLMEST
HHHHHHHHCCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
HYVTDRLEQLQNLGISLSLDDFGTGYSSLNYLYNLPINTLKIDRSFVWGIGQGQDQIVKT
HHHHHHHHHHHHCCCEEEECCCCCCHHHCCCEEECCCCEEEECCCEEECCCCCHHHHHHH
IIALAHGLEMNVVAEGIETIEQMQYLHTLGCELGQGYWFARPLQPEAAQQVIATLSSPMS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHCCCCE
LSLPIAE
EECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]