| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318890
Identifier: 158318890
GI number: 158318890
Start: 8755333
End: 8757075
Strand: Direct
Name: 158318890
Synonym: Franean1_7173
Alternate gene names: NA
Gene position: 8755333-8757075 (Clockwise)
Preceding gene: 158318889
Following gene: 158318895
Centisome position: 97.48
GC content: 69.76
Gene sequence:
>1743_bases ATGGACGTGAGACCCAGGCTGGCCTCCGTGGCCGGCGCCCAGCCCCAGACACTGGCGAAGTCGCCGGGGGATCTGATCCG CTACGCGGCCCTGGGCGGTGTCATCATCTCGACCGCGCTGGTGGCCGCCGCCTCCGCCGCGCTCGCCGTGCACATGACCA TGCACATGCCCGTCTTCTGGGCGATCGTGGTGGGCGCGTGCTGGGGACTCATCATCTACAACCTGGACCGGCTGCTCGTC GTCCAGATGGTCCGGCAGGACCGCAAACTGCTGGTGCTGGCGACCGCGCTACCCAGGGTCGGGCTCGCGCTCGTGCTCGG CACGGTCATCTCCACACCGATGGTGCTGCAGATCTTCGCTCCGGAGATCCGGACCGAACTGGAGGTCATCCGCCAGGAGG AGCAGAAGGAGTTCGCCGAGCAGCTCGCCACGAACCCCGACTACGCCTCCATCGATGGCCTGGCCAGGAAGGTCCAGGCA GAAGAGGATCTCATCAATCGCGGTGTTACGGGCGACATCTCGCAGGTGCCCGAGGTCGTCGCGGCCCGGGAGGCGCTCAG GATTGCGCAGACGGCGTTCGAGACGGCGGAACAGGCCGTCGTCTGCGAGAAGGAGGGCACCTGCGGCTCCGGCCGCAGCG GCGCGGGTATCGCCTACCAGGAGAAGGTCGAGATCCGCAACGAGGCCCGGACGGCCCGTGAGCTGGCACGGAACAATCTC ACCGCGGCAGAGACCACGGCCCGGGCGACCATCAGATCCTCGGAAAGTACTGCCATCGACACCGCCCGCGAACGACTCAG GACTGACAAGCCCAGGCTCGAGCAGCTGCGGGCGGACCGGGCCGCGGACGCGGCCCGGTACAGAAGCATGAACTCGCGGA ACTCGGGTCTGCTCGCACAACTCGAGGCACTGCACAGGATCTCCGGTTCGCACCCGACACTCCTGCTCGCGCACCTGGCG TTGTTCCTGCTCTTCCTGTCGATCGAACTGCTGCCGGTGCTCATGAAGCTGCTGCAGGTGCTGGGCCCGAAAACCCGCTA CGAGAAGCTCCTCGAGACCGACGAGCAGGATGCCCTGGCAGCCCGTGCGCGGGAGTCGGCCCACGCCCAGGTTCTGCAGC AGAGCCGGCTGGACATCGCGGAGAAGGCTGAGGCGCACCGCGCCAAGCACGCGATCAAGGCTGCCCGGGCCAACAACCGG CTCATGATCGAGACGCAGCAGCGGGTCATGGACGAGATCCTCGTCGCCTGGCAGGAGTACGCGCTCAGGACGGCCGAAGC CGATCTCGATCAGTGGCGCCGCGACCACCCGCTGCCCGGTGGGCCCACACCGCCGCCAGCCCGGCTCAGCCCGCTGGTCG GCCCGCTCCCCACCGCGCCTGACGACGACCTGGACGACGGCCTGGACGACGAGCCCGACGATTACGTGACGACCGCCCCG ATCCCGAGCCTCAGCTCTCCGGTCCGGATCCCCGGCCCGGTTCCCGGTCCCGCGCCGGGTGCCGGGCCGGGACCGGCCAC GCCCGGCCCTGATCCCGAGCCGGAACCAGGGCCGGAACCAGGGCCGGGAGCCGGCGTGGCCGCCGGCAGCGGCGACGACA CGGTGGTCGGGTTCGACAAAGCCCCGTATCCGGATGCGTATCCGGACACGGACGCGGACACCGTGATCCCGGCCTCGGAC GACGACGACCGGGGCACCTGGCGGGTGCCTGGCGGAGCGGGCAGGGGGACGGGCTGGCTGTAG
Upstream 100 bases:
>100_bases CGGTGCCGGGGCGCGCCGAGTTCCCGATCGACCCGACGACCTGGTTCGCCAACCCGCCGGAGATTCCCCGACGCGGCCGC GCGAGGAGATGGAAACTGCC
Downstream 100 bases:
>100_bases CGGCGCGCTCCCGCGGTCAGCTCCGGTCCGGATCGGCGGAAGCCGACCGGACCCACCCCGTTCCCTCCTTCCACACGAAG CTGCCGATGCGGTGCCCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 580; Mature: 580
Protein sequence:
>580_residues MDVRPRLASVAGAQPQTLAKSPGDLIRYAALGGVIISTALVAAASAALAVHMTMHMPVFWAIVVGACWGLIIYNLDRLLV VQMVRQDRKLLVLATALPRVGLALVLGTVISTPMVLQIFAPEIRTELEVIRQEEQKEFAEQLATNPDYASIDGLARKVQA EEDLINRGVTGDISQVPEVVAAREALRIAQTAFETAEQAVVCEKEGTCGSGRSGAGIAYQEKVEIRNEARTARELARNNL TAAETTARATIRSSESTAIDTARERLRTDKPRLEQLRADRAADAARYRSMNSRNSGLLAQLEALHRISGSHPTLLLAHLA LFLLFLSIELLPVLMKLLQVLGPKTRYEKLLETDEQDALAARARESAHAQVLQQSRLDIAEKAEAHRAKHAIKAARANNR LMIETQQRVMDEILVAWQEYALRTAEADLDQWRRDHPLPGGPTPPPARLSPLVGPLPTAPDDDLDDGLDDEPDDYVTTAP IPSLSSPVRIPGPVPGPAPGAGPGPATPGPDPEPEPGPEPGPGAGVAAGSGDDTVVGFDKAPYPDAYPDTDADTVIPASD DDDRGTWRVPGGAGRGTGWL
Sequences:
>Translated_580_residues MDVRPRLASVAGAQPQTLAKSPGDLIRYAALGGVIISTALVAAASAALAVHMTMHMPVFWAIVVGACWGLIIYNLDRLLV VQMVRQDRKLLVLATALPRVGLALVLGTVISTPMVLQIFAPEIRTELEVIRQEEQKEFAEQLATNPDYASIDGLARKVQA EEDLINRGVTGDISQVPEVVAAREALRIAQTAFETAEQAVVCEKEGTCGSGRSGAGIAYQEKVEIRNEARTARELARNNL TAAETTARATIRSSESTAIDTARERLRTDKPRLEQLRADRAADAARYRSMNSRNSGLLAQLEALHRISGSHPTLLLAHLA LFLLFLSIELLPVLMKLLQVLGPKTRYEKLLETDEQDALAARARESAHAQVLQQSRLDIAEKAEAHRAKHAIKAARANNR LMIETQQRVMDEILVAWQEYALRTAEADLDQWRRDHPLPGGPTPPPARLSPLVGPLPTAPDDDLDDGLDDEPDDYVTTAP IPSLSSPVRIPGPVPGPAPGAGPGPATPGPDPEPEPGPEPGPGAGVAAGSGDDTVVGFDKAPYPDAYPDTDADTVIPASD DDDRGTWRVPGGAGRGTGWL >Mature_580_residues MDVRPRLASVAGAQPQTLAKSPGDLIRYAALGGVIISTALVAAASAALAVHMTMHMPVFWAIVVGACWGLIIYNLDRLLV VQMVRQDRKLLVLATALPRVGLALVLGTVISTPMVLQIFAPEIRTELEVIRQEEQKEFAEQLATNPDYASIDGLARKVQA EEDLINRGVTGDISQVPEVVAAREALRIAQTAFETAEQAVVCEKEGTCGSGRSGAGIAYQEKVEIRNEARTARELARNNL TAAETTARATIRSSESTAIDTARERLRTDKPRLEQLRADRAADAARYRSMNSRNSGLLAQLEALHRISGSHPTLLLAHLA LFLLFLSIELLPVLMKLLQVLGPKTRYEKLLETDEQDALAARARESAHAQVLQQSRLDIAEKAEAHRAKHAIKAARANNR LMIETQQRVMDEILVAWQEYALRTAEADLDQWRRDHPLPGGPTPPPARLSPLVGPLPTAPDDDLDDGLDDEPDDYVTTAP IPSLSSPVRIPGPVPGPAPGAGPGPATPGPDPEPEPGPEPGPGAGVAAGSGDDTVVGFDKAPYPDAYPDTDADTVIPASD DDDRGTWRVPGGAGRGTGWL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62201; Mature: 62201
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVRPRLASVAGAQPQTLAKSPGDLIRYAALGGVIISTALVAAASAALAVHMTMHMPVFW CCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIVVGACWGLIIYNLDRLLVVQMVRQDRKLLVLATALPRVGLALVLGTVISTPMVLQIFA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHH PEIRTELEVIRQEEQKEFAEQLATNPDYASIDGLARKVQAEEDLINRGVTGDISQVPEVV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AAREALRIAQTAFETAEQAVVCEKEGTCGSGRSGAGIAYQEKVEIRNEARTARELARNNL HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TAAETTARATIRSSESTAIDTARERLRTDKPRLEQLRADRAADAARYRSMNSRNSGLLAQ CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LEALHRISGSHPTLLLAHLALFLLFLSIELLPVLMKLLQVLGPKTRYEKLLETDEQDALA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH ARARESAHAQVLQQSRLDIAEKAEAHRAKHAIKAARANNRLMIETQQRVMDEILVAWQEY HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHH ALRTAEADLDQWRRDHPLPGGPTPPPARLSPLVGPLPTAPDDDLDDGLDDEPDDYVTTAP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC IPSLSSPVRIPGPVPGPAPGAGPGPATPGPDPEPEPGPEPGPGAGVAAGSGDDTVVGFDK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC APYPDAYPDTDADTVIPASDDDDRGTWRVPGGAGRGTGWL CCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCC >Mature Secondary Structure MDVRPRLASVAGAQPQTLAKSPGDLIRYAALGGVIISTALVAAASAALAVHMTMHMPVFW CCCCCHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AIVVGACWGLIIYNLDRLLVVQMVRQDRKLLVLATALPRVGLALVLGTVISTPMVLQIFA HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHH PEIRTELEVIRQEEQKEFAEQLATNPDYASIDGLARKVQAEEDLINRGVTGDISQVPEVV HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH AAREALRIAQTAFETAEQAVVCEKEGTCGSGRSGAGIAYQEKVEIRNEARTARELARNNL HHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC TAAETTARATIRSSESTAIDTARERLRTDKPRLEQLRADRAADAARYRSMNSRNSGLLAQ CHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH LEALHRISGSHPTLLLAHLALFLLFLSIELLPVLMKLLQVLGPKTRYEKLLETDEQDALA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH ARARESAHAQVLQQSRLDIAEKAEAHRAKHAIKAARANNRLMIETQQRVMDEILVAWQEY HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHH ALRTAEADLDQWRRDHPLPGGPTPPPARLSPLVGPLPTAPDDDLDDGLDDEPDDYVTTAP HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC IPSLSSPVRIPGPVPGPAPGAGPGPATPGPDPEPEPGPEPGPGAGVAAGSGDDTVVGFDK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC APYPDAYPDTDADTVIPASDDDDRGTWRVPGGAGRGTGWL CCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA