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The map label for this gene is tcmR [H]

Identifier: 158318842

GI number: 158318842

Start: 8693008

End: 8693610

Strand: Reverse

Name: tcmR [H]

Synonym: Franean1_7123

Alternate gene names: 158318842

Gene position: 8693610-8693008 (Counterclockwise)

Preceding gene: 158318843

Following gene: 158318840

Centisome position: 96.79

GC content: 66.17

Gene sequence:

>603_bases
ATGCCGTCGAGCACTGACCGGGCAGCGCCTGGCCTGCGAGAACGCAAGAAGGCCCGGACCAGGGCCGCAATCCAGACCCA
CGCCCTGCGACTGTTTCGCGAACAGGGCTACAACGCGACCACCGTCGAACAGATCATCGACGCTGCGGAAGTCTCGGAGA
CGACCTTCTTCCGTTACTTCCCCACGAAGGAAGAGGTCGTCCTCCAGGACGACCTCGACCCACTGATCATCGAGGCGTTC
CACAACCAGCCCGCGGATCTCACGCCCATCCAGGCGATACGCGCCGCGATCCGTCAACAGTTCGACGCCCTAACGCCGGA
CCAGAGGCAGGCAATACAGGAACGCACCGTGCTCATCGTTGCCGAGCCCGCCCTGCGCGCAGCCATGCTCGACCAGATTT
CCCAGACCATGCTCCTGCTTGCCGACGCGATCGCCGAACGGACCGGACGCCCGAAGGATGACCTCGCCGTGCGTACAGTC
GCCGGCAGTGCCATCGGCGCCATGCTCGCCACCCTGCCTGCCCTGGCCGACGACCCCAACGCGGACCTGCCCGCCCTCGT
CGACCAGGCCCTCGGCCACCTGGAGGCTGGACTACCGGTATGA

Upstream 100 bases:

>100_bases
GTGATCGCCATACTTGGAGCCTGCGTGGCTCTGGCAGTCCTTCCCCGGGGCCGATCGCGTAGAACGGAAGCCGGTCAGCC
GACCGAGGAAGGGACCGTCG

Downstream 100 bases:

>100_bases
CACAGCAACCCAACCAACCGGGCCCCGGACCGACGCGACTCCCCGCGGCACATCGCCCGCCGGGCGGGCCGGGTGCTACC
GTGGAATCGGAGACAATCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Tetracenomycin C transcriptional repressor [H]

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MPSSTDRAAPGLRERKKARTRAAIQTHALRLFREQGYNATTVEQIIDAAEVSETTFFRYFPTKEEVVLQDDLDPLIIEAF
HNQPADLTPIQAIRAAIRQQFDALTPDQRQAIQERTVLIVAEPALRAAMLDQISQTMLLLADAIAERTGRPKDDLAVRTV
AGSAIGAMLATLPALADDPNADLPALVDQALGHLEAGLPV

Sequences:

>Translated_200_residues
MPSSTDRAAPGLRERKKARTRAAIQTHALRLFREQGYNATTVEQIIDAAEVSETTFFRYFPTKEEVVLQDDLDPLIIEAF
HNQPADLTPIQAIRAAIRQQFDALTPDQRQAIQERTVLIVAEPALRAAMLDQISQTMLLLADAIAERTGRPKDDLAVRTV
AGSAIGAMLATLPALADDPNADLPALVDQALGHLEAGLPV
>Mature_199_residues
PSSTDRAAPGLRERKKARTRAAIQTHALRLFREQGYNATTVEQIIDAAEVSETTFFRYFPTKEEVVLQDDLDPLIIEAFH
NQPADLTPIQAIRAAIRQQFDALTPDQRQAIQERTVLIVAEPALRAAMLDQISQTMLLLADAIAERTGRPKDDLAVRTVA
GSAIGAMLATLPALADDPNADLPALVDQALGHLEAGLPV

Specific function: Represses transcription of the divergently oriented tcmR and tcmA (tetracenomycin C resistance and export) genes by binding to an intergenic operator region. This binding is inhibited by tetracenomycin C [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21798; Mature: 21667

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSTDRAAPGLRERKKARTRAAIQTHALRLFREQGYNATTVEQIIDAAEVSETTFFRYF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEC
PTKEEVVLQDDLDPLIIEAFHNQPADLTPIQAIRAAIRQQFDALTPDQRQAIQERTVLIV
CCCCCEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEE
AEPALRAAMLDQISQTMLLLADAIAERTGRPKDDLAVRTVAGSAIGAMLATLPALADDPN
ECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADLPALVDQALGHLEAGLPV
CCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PSSTDRAAPGLRERKKARTRAAIQTHALRLFREQGYNATTVEQIIDAAEVSETTFFRYF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEC
PTKEEVVLQDDLDPLIIEAFHNQPADLTPIQAIRAAIRQQFDALTPDQRQAIQERTVLIV
CCCCCEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCEEEE
AEPALRAAMLDQISQTMLLLADAIAERTGRPKDDLAVRTVAGSAIGAMLATLPALADDPN
ECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
ADLPALVDQALGHLEAGLPV
CCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1592819; 1592820 [H]