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The map label for this gene is xerD [C]

Identifier: 158318840

GI number: 158318840

Start: 8690755

End: 8691309

Strand: Reverse

Name: xerD [C]

Synonym: Franean1_7121

Alternate gene names: 158318840

Gene position: 8691309-8690755 (Counterclockwise)

Preceding gene: 158318842

Following gene: 158318839

Centisome position: 96.76

GC content: 67.39

Gene sequence:

>555_bases
GTGCGGGCCGGCAACAACGAGTGCTCGACCACCGGCGGCCCGGACACCCATCCCACCAACCTCGGGGACCAGTGCAACCC
CATTAGCAACGTCGGCGAACCGGCGCGTACGTCAGCGGCCTTCCACGGCCGAAAACGTACGTCCGCGGACGTTGGAATGA
CGGTCAGTTCGGCCTGGACGGCGGAACGTGCCGGGAATCCCGGCGACCCGCTGTTTCCCACCATCACCGGCCGGCCGCTC
AGCCGTGACGCCATCGAACGCCGGATCGCCCTCTACACGGCCCGAGCCGCCGCAAGCTGTCCCTCGATCTCAACCAAGCA
CGTCACCGCCCACACCCTCCGGCACACCGCCGCTATGCGGCTGCTCCTCGCAGGCGTCGACCAAAGCGTCATCGCCCTCT
GGCTCGGACACGCCCACATCGCCACCACCGACCGCTACCTACACGCCGACATGACCCAAAAAGAACAGGCACTCGCCCGC
ACCCAACCATTCGGCAGCGCACCCGGCCACTACCGCCCACCCGACCCGCTCCTGGCATTCCTCGAAAACCTGTAA

Upstream 100 bases:

>100_bases
CGCGCTAATGGATCAGTGCTCGTCTTGGCACGCCGTCCCACCAGTCGTTGACACCCTCCCAGCAGCCGGTGGCGGCACGT
TCTACACCTAGACCTCGAAC

Downstream 100 bases:

>100_bases
GCCCGAGGCCCTGCTTGCTGACCCCGCGGGACTGAAGCAGTCTGTCACCGGCCTGTTGGCTTGATATCGCTCACCGGTTC
ATCGCGTCGCAGGTCCCGGA

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MRAGNNECSTTGGPDTHPTNLGDQCNPISNVGEPARTSAAFHGRKRTSADVGMTVSSAWTAERAGNPGDPLFPTITGRPL
SRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALAR
TQPFGSAPGHYRPPDPLLAFLENL

Sequences:

>Translated_184_residues
MRAGNNECSTTGGPDTHPTNLGDQCNPISNVGEPARTSAAFHGRKRTSADVGMTVSSAWTAERAGNPGDPLFPTITGRPL
SRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALAR
TQPFGSAPGHYRPPDPLLAFLENL
>Mature_184_residues
MRAGNNECSTTGGPDTHPTNLGDQCNPISNVGEPARTSAAFHGRKRTSADVGMTVSSAWTAERAGNPGDPLFPTITGRPL
SRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMRLLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALAR
TQPFGSAPGHYRPPDPLLAFLENL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 19684; Mature: 19684

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGNNECSTTGGPDTHPTNLGDQCNPISNVGEPARTSAAFHGRKRTSADVGMTVSSAWT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCHH
AERAGNPGDPLFPTITGRPLSRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMR
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALARTQPFGSAPGHYRPPDPLLAF
HHHHCCCHHHHHHHHCCHHEECCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
LENL
HHCC
>Mature Secondary Structure
MRAGNNECSTTGGPDTHPTNLGDQCNPISNVGEPARTSAAFHGRKRTSADVGMTVSSAWT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEECCCHH
AERAGNPGDPLFPTITGRPLSRDAIERRIALYTARAAASCPSISTKHVTAHTLRHTAAMR
HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
LLLAGVDQSVIALWLGHAHIATTDRYLHADMTQKEQALARTQPFGSAPGHYRPPDPLLAF
HHHHCCCHHHHHHHHCCHHEECCCHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
LENL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]