| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is yxjM [H]
Identifier: 158318836
GI number: 158318836
Start: 8686609
End: 8687775
Strand: Direct
Name: yxjM [H]
Synonym: Franean1_7116
Alternate gene names: 158318836
Gene position: 8686609-8687775 (Clockwise)
Preceding gene: 158318835
Following gene: 158318837
Centisome position: 96.71
GC content: 70.18
Gene sequence:
>1167_bases ATGGCGCTCCGTCCGCCAGTGGCCGATCGGCTGCTGGCGGCGGCCTCGTTCGTGCTCGGCGTCGTCGTCGCGATCACGCT CGAGGCGGTCGATTTCGACGGCGAGCGAAGCGTAGATCTGTGGGCGATCGCGCTCCTGGGCGCGATGTCGGCGGCGTTAC TGGCCCGCCGGCGCTGGCCGATCCTCGTCGTCCTCGCGGTCCTCGCAGTGTCGACGCCGTACCACGTCCTCGACTATCCC CATGAGGCCACGATGCCGGCCTCGCTTGTGGCGGCGTTCACGGCGGCGCGCTGCAGCGAGCCACCGCGGCGGGCCCTCGC CGCCTTGGTGGCGGTGGCCGCGGTGACCGTGCCGGTCCTCGCCGACGAGGCGTCGGGGGCACCTGACGATGCTCTCCTCG GCGTCGGCTGGCTGTTCATGGCCTTCTTTGCCGGGCTGGCGGTCCGCTTCCATCAAAACTGGAAGGCCGCCGTCACCGCG CGGCTTGAGCAGGAGCGTGCCGACGAGGTCGAGCGGCGGGTCGCCGAGGAGCGGGTCCTGATCGCTGCCGAGCTGCACGA CGTCCTAGCGCACGGCCTCGCGGTCGCGAACGTCCAGGCTTCCGTCGCTGCGCACCTGATCGACCAGCTGCCGAGGCGCG GGGATGCGTCGCTGCAGGAGCTGTCCAGAACGCTGCATAACCTGTCGGACACGAGCCGGGCCACACTCCATGAGCTGCGT GCCGTTCTGGACGTGCTGCATGGTGGCGAGGCCGAGCCAACCGAGCCAGTGCCCCACCTCGGCGAGCTGCAGCGTCTGGT GGAGATGGCCGAGGCGGCTGATATCCGAGTCGACGTGGAGGCTGACGGGCTCCCGGACGAGTTACCGTCGACGGTGTCCG TCGTGGCCTATCGGATCATCCAGGAGTCGCTCACCAATGTCATTCGACACTCGACGGCCAAGCACGCGACCGTCCGGCTC GGCCAGAACGGCCACCGGCTGCGGATCGCGGTCGTCGATCACGGGCCCGCGCGACCGAGCTCAACCGTGACACCCGGCTT CGGGATCGCCGGGATGACAGGGCGAGCACAGGCCGTCGGTGGCGAATTGTCCGCCGGCCCGGGCGAGTCCGGAGGATTCG AGGTATGGGCCAGCCTGCCGCTGCCGGAGATCTGGCGGGTGCCGTAG
Upstream 100 bases:
>100_bases GGTTCCTGCACTGACAATGTCGCTGGGTTCGCGGATCTGGTGGCCCAGCAAGCTCTGGCGCGCGGCATAGGACTGTGTCG ATGACCCTGTGTGAACGATG
Downstream 100 bases:
>100_bases TGATCCGGATCCTGCTCGCCGACGACCAGACACTGGTGCGCGGCGCGTTCGCGCTGCTGGTTAACTCCGCTGACGACATG GAGGTCGTCGGGGAGGCCGG
Product: integral membrane sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MALRPPVADRLLAAASFVLGVVVAITLEAVDFDGERSVDLWAIALLGAMSAALLARRRWPILVVLAVLAVSTPYHVLDYP HEATMPASLVAAFTAARCSEPPRRALAALVAVAAVTVPVLADEASGAPDDALLGVGWLFMAFFAGLAVRFHQNWKAAVTA RLEQERADEVERRVAEERVLIAAELHDVLAHGLAVANVQASVAAHLIDQLPRRGDASLQELSRTLHNLSDTSRATLHELR AVLDVLHGGEAEPTEPVPHLGELQRLVEMAEAADIRVDVEADGLPDELPSTVSVVAYRIIQESLTNVIRHSTAKHATVRL GQNGHRLRIAVVDHGPARPSSTVTPGFGIAGMTGRAQAVGGELSAGPGESGGFEVWASLPLPEIWRVP
Sequences:
>Translated_388_residues MALRPPVADRLLAAASFVLGVVVAITLEAVDFDGERSVDLWAIALLGAMSAALLARRRWPILVVLAVLAVSTPYHVLDYP HEATMPASLVAAFTAARCSEPPRRALAALVAVAAVTVPVLADEASGAPDDALLGVGWLFMAFFAGLAVRFHQNWKAAVTA RLEQERADEVERRVAEERVLIAAELHDVLAHGLAVANVQASVAAHLIDQLPRRGDASLQELSRTLHNLSDTSRATLHELR AVLDVLHGGEAEPTEPVPHLGELQRLVEMAEAADIRVDVEADGLPDELPSTVSVVAYRIIQESLTNVIRHSTAKHATVRL GQNGHRLRIAVVDHGPARPSSTVTPGFGIAGMTGRAQAVGGELSAGPGESGGFEVWASLPLPEIWRVP >Mature_387_residues ALRPPVADRLLAAASFVLGVVVAITLEAVDFDGERSVDLWAIALLGAMSAALLARRRWPILVVLAVLAVSTPYHVLDYPH EATMPASLVAAFTAARCSEPPRRALAALVAVAAVTVPVLADEASGAPDDALLGVGWLFMAFFAGLAVRFHQNWKAAVTAR LEQERADEVERRVAEERVLIAAELHDVLAHGLAVANVQASVAAHLIDQLPRRGDASLQELSRTLHNLSDTSRATLHELRA VLDVLHGGEAEPTEPVPHLGELQRLVEMAEAADIRVDVEADGLPDELPSTVSVVAYRIIQESLTNVIRHSTAKHATVRLG QNGHRLRIAVVDHGPARPSSTVTPGFGIAGMTGRAQAVGGELSAGPGESGGFEVWASLPLPEIWRVP
Specific function: Probable member of the two-component regulatory system yxjM/yxjL. May activate yxjL by phosphorylation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1787474, Length=229, Percent_Identity=29.2576419213974, Blast_Score=74, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011712 [H]
Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 41234; Mature: 41102
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALRPPVADRLLAAASFVLGVVVAITLEAVDFDGERSVDLWAIALLGAMSAALLARRRWP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH ILVVLAVLAVSTPYHVLDYPHEATMPASLVAAFTAARCSEPPRRALAALVAVAAVTVPVL HHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ADEASGAPDDALLGVGWLFMAFFAGLAVRFHQNWKAAVTARLEQERADEVERRVAEERVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IAAELHDVLAHGLAVANVQASVAAHLIDQLPRRGDASLQELSRTLHNLSDTSRATLHELR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH AVLDVLHGGEAEPTEPVPHLGELQRLVEMAEAADIRVDVEADGLPDELPSTVSVVAYRII HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHH QESLTNVIRHSTAKHATVRLGQNGHRLRIAVVDHGPARPSSTVTPGFGIAGMTGRAQAVG HHHHHHHHHHCCCHHHEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCC GELSAGPGESGGFEVWASLPLPEIWRVP CCCCCCCCCCCCEEEEECCCCCHHCCCC >Mature Secondary Structure ALRPPVADRLLAAASFVLGVVVAITLEAVDFDGERSVDLWAIALLGAMSAALLARRRWP CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCH ILVVLAVLAVSTPYHVLDYPHEATMPASLVAAFTAARCSEPPRRALAALVAVAAVTVPVL HHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH ADEASGAPDDALLGVGWLFMAFFAGLAVRFHQNWKAAVTARLEQERADEVERRVAEERVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IAAELHDVLAHGLAVANVQASVAAHLIDQLPRRGDASLQELSRTLHNLSDTSRATLHELR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH AVLDVLHGGEAEPTEPVPHLGELQRLVEMAEAADIRVDVEADGLPDELPSTVSVVAYRII HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHH QESLTNVIRHSTAKHATVRLGQNGHRLRIAVVDHGPARPSSTVTPGFGIAGMTGRAQAVG HHHHHHHHHHCCCHHHEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCC GELSAGPGESGGFEVWASLPLPEIWRVP CCCCCCCCCCCCEEEEECCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8978088; 8969509; 9384377 [H]