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The map label for this gene is yxjL [H]

Identifier: 158318837

GI number: 158318837

Start: 8687775

End: 8688419

Strand: Direct

Name: yxjL [H]

Synonym: Franean1_7117

Alternate gene names: 158318837

Gene position: 8687775-8688419 (Clockwise)

Preceding gene: 158318836

Following gene: 158318838

Centisome position: 96.72

GC content: 70.23

Gene sequence:

>645_bases
GTGATCCGGATCCTGCTCGCCGACGACCAGACACTGGTGCGCGGCGCGTTCGCGCTGCTGGTTAACTCCGCTGACGACAT
GGAGGTCGTCGGGGAGGCCGGCACCGGCGACGAGGCGCTGACGCTGACCCGGGACCTGCGCCCCGACGTCGTCTTGATGG
ACATCAGGATGCCGAGCACCGACGGCATCGAGGCGACTCGGCAGATCGTCGCTGACGATGGAGCGAGCGGCAGCAGGGTG
CTGATCCTGACCACGTTCGAGACAGACACCAACGTACTGCGCGGCCTTCGCGCGGGGGCGTGCGGATTCCTGCCCAAGGA
CACCCGTCCGGACGCGCTGCTGGACGCCATCCGCACCATCGCGGCGGGGGAGGCGCTGCTGTCGCCCGGCGCGACCAGGG
CGGTCATCACCCGTGCGCTGAGTCACCCGGACGCGCCTGCGCCCGAGCGGCTGGCCAGCCTGACGGCGCGCGAACGCGAG
GTGCTTCGGCTCATCGCCGCGGGCCGGAGCAACCAAGAGATCGCGGACGAGCTGGTCGTCAGCCCGCTGACCGCCAAGAC
TCACGTGGGCCGCATCCTCGCGAAGATGGGCGCTCGCGACCGGGTCCATCTCGTGATCGCCGCATACGAAGCCGGGCTTC
CCTAG

Upstream 100 bases:

>100_bases
CACAGGCCGTCGGTGGCGAATTGTCCGCCGGCCCGGGCGAGTCCGGAGGATTCGAGGTATGGGCCAGCCTGCCGCTGCCG
GAGATCTGGCGGGTGCCGTA

Downstream 100 bases:

>100_bases
CATCGGCTATTCACGCGGATTTTTACTGATCTTCCAGTCTGGCCTGCCCTGGCAACAGAAAACTGCCTCCGACCTGGGAA
GACAAGGGTGTCGAAGTCCT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPSTDGIEATRQIVADDGASGSRV
LILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTIAAGEALLSPGATRAVITRALSHPDAPAPERLASLTARERE
VLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGLP

Sequences:

>Translated_214_residues
MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPSTDGIEATRQIVADDGASGSRV
LILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTIAAGEALLSPGATRAVITRALSHPDAPAPERLASLTARERE
VLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGLP
>Mature_214_residues
MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPSTDGIEATRQIVADDGASGSRV
LILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTIAAGEALLSPGATRAVITRALSHPDAPAPERLASLTARERE
VLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGLP

Specific function: Probable member of the two-component regulatory system yxjM/yxjL [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=30.5164319248826, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1790102, Length=204, Percent_Identity=34.3137254901961, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787473, Length=207, Percent_Identity=35.7487922705314, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786747, Length=204, Percent_Identity=27.9411764705882, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788712, Length=190, Percent_Identity=24.7368421052632, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22692; Mature: 22692

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPST
CEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCEEEEEEECCCC
DGIEATRQIVADDGASGSRVLILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTI
CCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
AAGEALLSPGATRAVITRALSHPDAPAPERLASLTAREREVLRLIAAGRSNQEIADELVV
HCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SPLTAKTHVGRILAKMGARDRVHLVIAAYEAGLP
CCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCC
>Mature Secondary Structure
MIRILLADDQTLVRGAFALLVNSADDMEVVGEAGTGDEALTLTRDLRPDVVLMDIRMPST
CEEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCEEEEEEECCCC
DGIEATRQIVADDGASGSRVLILTTFETDTNVLRGLRAGACGFLPKDTRPDALLDAIRTI
CCHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
AAGEALLSPGATRAVITRALSHPDAPAPERLASLTAREREVLRLIAAGRSNQEIADELVV
HCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
SPLTAKTHVGRILAKMGARDRVHLVIAAYEAGLP
CCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]