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The map label for this gene is ycdO [H]

Identifier: 158318737

GI number: 158318737

Start: 8545929

End: 8547110

Strand: Reverse

Name: ycdO [H]

Synonym: Franean1_7008

Alternate gene names: 158318737

Gene position: 8547110-8545929 (Counterclockwise)

Preceding gene: 158318738

Following gene: 158318736

Centisome position: 95.16

GC content: 67.77

Gene sequence:

>1182_bases
GTGAAATCGCCTGTCGGCCGCGTCATGCGCCTGGCCTGTCCTGTCGTCGTGGCCGCAACCCTTGCCGCGGCCTGCTCGTC
GGATAACTCCTCCGACTCCGGCACGTCCGGCGCCAGCGGCGGACCGATCGCGGTGAACGCGGGTGACAAGGACTGCAAGG
TGGCCAGCGCGGAACTGCCCGCGGGCCGGCACACCTTCGAGGTCACCAACTCCGCGTCGCAGGTCACCGAGGTGTACGTC
TACGCCGACGGCGACCGGATCATGGGCGAGGTCGAGAACGTCGGCCCGTCGACGAAGCGGAACCTGATCGTCGATCTGCC
GGCCGGCAGGTACCAGGTGGCGTGCAAACCCGGCATGGTGGGCGACGGCATCCGCACCGCGCTCACGGTTACCGGCGAGG
CCGCGCCGCCGCAGACGCTCGACCAGAACCTGCAGACCGCGGTCACCTCGTACAAGACGTACGTCGGGTCCGAGACCCAG
GCTCTGGTCGACACCACCGCGGGGTTCGTCGAGGCGATCAACTCGGGTGACCTGGCCAAGGCCAAGGAGGCCTACCCGAA
CGTCCGGCTGCACTACGAGCGCATCGAGCCGATCGCGGAGTCCTTCGGCGACCTCGACCCGCTCATCGACATGCGCATCG
ACGACGCCACGCCCGGCACCCCGTTCGTCGGCTTCCACGCGATCGAACAGAAGCTGTTCGAGGGGAACACCCTGGACGGG
ACCCAGCCGCTCGCCACGACGCTGACCACGAACGTCGGCAAGCTCAACGAGCTGATCAAGACTGTGGAGCTCACGCCGCT
GGTCATGGCCAACGGGGCGAAGTCGTTGCTCGACGAGGTCGCCGCGTCGAAGGTCACCGGTGAGGAGGAGCGCTACTCCC
GCATCGACCTGGTCGACTTCGCCGGCAACGTCGACGGAGCCAAGTACGTCTACAGCGCGCTGCGCCCGGCCCTGCAGGAG
AAGGACCCGGAGCTGGTGGCGACGCTCGACAAGCGCTTCCCCGCGCTGGTCAGCCTGCTCGACAAGCACCTGGCCAAGCC
GGGTGACAACGGCTACATCCCCGGCAGCCCGTACATCTCCTACGACAGCCTCACCCAGGACGAGGTCAAGGCCCTCGCCG
TCGAGGTCGACGCCATCTCCGAGCCCATCGGACAGATCGCCGGAGTCGTGACCAGCAAGTGA

Upstream 100 bases:

>100_bases
TCCCGTCGGGATCGACCAGTTGACGGCCACCGCGGCGGCGGGTGCCGTCATCCACGCCTGATCCATCTGTCGCATCGCCA
GAAACCTTCGAGGAGAACCG

Downstream 100 bases:

>100_bases
GCCGACTGCCCGATCCCAGCGGCCCGGACGCCGTCGCCGCCGAGGACCCCACCACCGCCGTCACCTCCAGCGGCGCCGGC
GTGAACGACGCCGGCCCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKSPVGRVMRLACPVVVAATLAAACSSDNSSDSGTSGASGGPIAVNAGDKDCKVASAELPAGRHTFEVTNSASQVTEVYV
YADGDRIMGEVENVGPSTKRNLIVDLPAGRYQVACKPGMVGDGIRTALTVTGEAAPPQTLDQNLQTAVTSYKTYVGSETQ
ALVDTTAGFVEAINSGDLAKAKEAYPNVRLHYERIEPIAESFGDLDPLIDMRIDDATPGTPFVGFHAIEQKLFEGNTLDG
TQPLATTLTTNVGKLNELIKTVELTPLVMANGAKSLLDEVAASKVTGEEERYSRIDLVDFAGNVDGAKYVYSALRPALQE
KDPELVATLDKRFPALVSLLDKHLAKPGDNGYIPGSPYISYDSLTQDEVKALAVEVDAISEPIGQIAGVVTSK

Sequences:

>Translated_393_residues
MKSPVGRVMRLACPVVVAATLAAACSSDNSSDSGTSGASGGPIAVNAGDKDCKVASAELPAGRHTFEVTNSASQVTEVYV
YADGDRIMGEVENVGPSTKRNLIVDLPAGRYQVACKPGMVGDGIRTALTVTGEAAPPQTLDQNLQTAVTSYKTYVGSETQ
ALVDTTAGFVEAINSGDLAKAKEAYPNVRLHYERIEPIAESFGDLDPLIDMRIDDATPGTPFVGFHAIEQKLFEGNTLDG
TQPLATTLTTNVGKLNELIKTVELTPLVMANGAKSLLDEVAASKVTGEEERYSRIDLVDFAGNVDGAKYVYSALRPALQE
KDPELVATLDKRFPALVSLLDKHLAKPGDNGYIPGSPYISYDSLTQDEVKALAVEVDAISEPIGQIAGVVTSK
>Mature_393_residues
MKSPVGRVMRLACPVVVAATLAAACSSDNSSDSGTSGASGGPIAVNAGDKDCKVASAELPAGRHTFEVTNSASQVTEVYV
YADGDRIMGEVENVGPSTKRNLIVDLPAGRYQVACKPGMVGDGIRTALTVTGEAAPPQTLDQNLQTAVTSYKTYVGSETQ
ALVDTTAGFVEAINSGDLAKAKEAYPNVRLHYERIEPIAESFGDLDPLIDMRIDDATPGTPFVGFHAIEQKLFEGNTLDG
TQPLATTLTTNVGKLNELIKTVELTPLVMANGAKSLLDEVAASKVTGEEERYSRIDLVDFAGNVDGAKYVYSALRPALQE
KDPELVATLDKRFPALVSLLDKHLAKPGDNGYIPGSPYISYDSLTQDEVKALAVEVDAISEPIGQIAGVVTSK

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=356, Percent_Identity=37.0786516853933, Blast_Score=211, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 41423; Mature: 41423

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSPVGRVMRLACPVVVAATLAAACSSDNSSDSGTSGASGGPIAVNAGDKDCKVASAELP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCC
AGRHTFEVTNSASQVTEVYVYADGDRIMGEVENVGPSTKRNLIVDLPAGRYQVACKPGMV
CCCEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCC
GDGIRTALTVTGEAAPPQTLDQNLQTAVTSYKTYVGSETQALVDTTAGFVEAINSGDLAK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH
AKEAYPNVRLHYERIEPIAESFGDLDPLIDMRIDDATPGTPFVGFHAIEQKLFEGNTLDG
HHHHCCCCEEEHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
TQPLATTLTTNVGKLNELIKTVELTPLVMANGAKSLLDEVAASKVTGEEERYSRIDLVDF
CCCHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCEEEEE
AGNVDGAKYVYSALRPALQEKDPELVATLDKRFPALVSLLDKHLAKPGDNGYIPGSPYIS
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YDSLTQDEVKALAVEVDAISEPIGQIAGVVTSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSPVGRVMRLACPVVVAATLAAACSSDNSSDSGTSGASGGPIAVNAGDKDCKVASAELP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEECCCCC
AGRHTFEVTNSASQVTEVYVYADGDRIMGEVENVGPSTKRNLIVDLPAGRYQVACKPGMV
CCCEEEEECCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCC
GDGIRTALTVTGEAAPPQTLDQNLQTAVTSYKTYVGSETQALVDTTAGFVEAINSGDLAK
CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH
AKEAYPNVRLHYERIEPIAESFGDLDPLIDMRIDDATPGTPFVGFHAIEQKLFEGNTLDG
HHHHCCCCEEEHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
TQPLATTLTTNVGKLNELIKTVELTPLVMANGAKSLLDEVAASKVTGEEERYSRIDLVDF
CCCHHHHHHCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHCEEEEE
AGNVDGAKYVYSALRPALQEKDPELVATLDKRFPALVSLLDKHLAKPGDNGYIPGSPYIS
CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
YDSLTQDEVKALAVEVDAISEPIGQIAGVVTSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]