| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318524
Identifier: 158318524
GI number: 158318524
Start: 8274330
End: 8276087
Strand: Reverse
Name: 158318524
Synonym: Franean1_6792
Alternate gene names: NA
Gene position: 8276087-8274330 (Counterclockwise)
Preceding gene: 158318525
Following gene: 158318522
Centisome position: 92.14
GC content: 70.93
Gene sequence:
>1758_bases TTGCCCCTGGATGCCGCGGACGCCGGCGAGGAGTACCTGGCGGCGTTGGAGGAGATCGAGAGCTACGCCCGTGCCGCCCG CCTGCTCACCCTGGAATCGCCGCCGCAGCAGGTGGCTTTCCGTCGCTGGTACGTGGGATCGCTGGTGACACAGCTCCGGA TCGCTGCCCGGGGCGGCGTGCCCGAGCCGGTGCGTACCTTCGAGCAGTATCTGCTGGACACTCTCGACGAGGTGGTCAGA ACCCAACGCACGGCCGAACGGGCCGCGCGGCTGCAGGGGGTCACCGCGGCCCTCGCTCTGGCGACGACGCCGGAGAAAGT CGCTGAGGTGGTGGTTTCCGAAGGGGTGACCGCCCTGGGCGCGTTCGGGGGCGGCCTGCTGGTCGCGCGGGACGCTGGGC GGCTCGCGGTCCCCGGCACCGTCGGGTACCGCGAGGAGGTGGTCTCGATGCTGCGTGCGGAACGGCTCGACGACCGCCTG CCGGCCGCCGATGCGATCCGCGGCGGTATGCCGGTCTGGTTGGAATCCCGCCAGGACCGCGACTCGCGCTACCCGGAGCT GGCCGAGCGGGAACCGAATGTGGTGTCGATGTGTGCGTTGCCGCTGCTCGTCGGTGACCGTGTGCTCGGGGCGTTGCGGT TCTCCTTCGACCACCCCCGGCTTTTCGACGCTGACGAACGTGACTTTGTCCTGGCGCTGGCGGCGCAGACCGCGCTGGCC GTGGAACGGGCCCGGCTGTTCGCCGCCGAGCGCCGTGCGCTCGAACGCAGCGCTTTCCTCGCGACGCTCGCCGACCGGAT CACCACCACGCTGGACCCACGGCGCGTCCTCGAGCAGACCACCGACCTGTTGGTGCCCCGGTACGCCGAACGGGCCGTCG CGGTCCTGACGGACGAGCCGATGACCTCCATCGGCGATCCCTCCCCGAGGGAACTTGCCCTGATGAGGGCGGTTACTCAG ACCGGAACCACGACCACCACCACCACCACCGACGGCGACGGCGACGAGACCGTACTGGTTGTTCCGCTCACCGTTGGCGG CCGTACGGTCGCCGTCCTCGCTGTGCTCTGTCACGAGGACAGCCCACGCGCCCGCGACGAGCAGGATGCCATCGAGGAGG TCGCCCGGCGTGCGGCCGTCGCGGTGGGCAACGCTCAGCTGTACGAACAGGAACGGCGCACCGCTCTCACCCTGCAACGC AGCCTTCTCCCGCAGCGACTGCCGACGATCGGTGGGCTGTCGTTCGCCTGGCGCTACCTTCCTGGCAGCGCCGGCGCCCT GGTCGGTGGCGACTGGTACGACGTCCTTCCCCTGGACGACGGTCGGGTGGCGCTTGTCATCGGGGACGTCATGGGGCACG GCATCCAGGCCGCCGCGACCGTGGGCCAGCTGCGGGCCTCCGCCCGCGCACACATCACCACCGATCCCAGTCCGTCGGCC GTACTGGCCCGGCTCGATGAGGCAGCGAATCGTCTCGAGCAGGGACAGATCGCCACGGCGGCGCTTGCCGTGCTGGACCC CGCGAACGCGCGGCTCACCCTGGCATCCGCCGGGCACCTGCCACCGCGGCAGCTTCCCCCGACCAGCTGTGCGACCAGGC CCTGGCCGTACTCGGCCGGCTGGCCGGCCACGACGACGACACCGCCCTGCTCGCCGTCATGGTCAACACCCTGGGCCCCG CATGATCTCGCCGAGCTGGAGGTCATTGGCCCAACCGGCGATCTCAGCGTGCTCGCGGTAGTGGCGGACTCGCGGTAG
Upstream 100 bases:
>100_bases GGCTGCGGCTGTCGTCTGCTTGGGCGACCCTGTGGCCAGGGGATGTGCTGATAATCCAGGTAGCACGGTTGCGTTTGTGT GCCGGCTGGGGTGGCTGGCG
Downstream 100 bases:
>100_bases TGGCGGAGGTGGCGCCGCCGGCCGTGGTTCGGGCCCGGCTGGGAGGGCGGGCCCCGGGCCACGGCCGGCGGACGGTCAGG CCTTGGCCTGCGCGCTGGAC
Product: GAF sensor-containing protein serine phosphatase
Products: NA
Alternate protein names: PAS/PAC Sensor Protein; Integral Membrane Sensor Protein; Stage II Sporulation Protein E; Multi-Sensor Signal Transduction Histidine Kinase; Regulatory Protein; LOW QUALITY PROTEIN Membrane Protein; PAS/PAC Sensor Hybrid Histidine Kinase; Integral Membrane Protein; GAF Sensor Protein; PAS/C-Like; GAF Domain-Containing Serine/Threonine Phosphatase; Protein Phosphatase; Phosphatase; Protein Serine/Threonine Phosphatase; Serine Phosphatase; LOW QUALITY PROTEIN Integral Membrane Protein; Response Regulator Receiver Modulated Serine Phosphatase; PAS Sensor Protein; Fused Histidine Kinase With GAF Domain/SpoIIE-Like Protein; C-Like; Bacteriophytochrome; Sensor-Component Of A Two-Component Regulator; PE-PGRS Family Protein; PAS Containing C-Like; LOW QUALITY PROTEIN Stage II Sporulation Protein E; Multi-Sensor Histidine Kinase; Sensor Histidine Kinase/Response Regulator; Regulatory Protein Phosphatase
Number of amino acids: Translated: 585; Mature: 584
Protein sequence:
>585_residues MPLDAADAGEEYLAALEEIESYARAARLLTLESPPQQVAFRRWYVGSLVTQLRIAARGGVPEPVRTFEQYLLDTLDEVVR TQRTAERAARLQGVTAALALATTPEKVAEVVVSEGVTALGAFGGGLLVARDAGRLAVPGTVGYREEVVSMLRAERLDDRL PAADAIRGGMPVWLESRQDRDSRYPELAEREPNVVSMCALPLLVGDRVLGALRFSFDHPRLFDADERDFVLALAAQTALA VERARLFAAERRALERSAFLATLADRITTTLDPRRVLEQTTDLLVPRYAERAVAVLTDEPMTSIGDPSPRELALMRAVTQ TGTTTTTTTTDGDGDETVLVVPLTVGGRTVAVLAVLCHEDSPRARDEQDAIEEVARRAAVAVGNAQLYEQERRTALTLQR SLLPQRLPTIGGLSFAWRYLPGSAGALVGGDWYDVLPLDDGRVALVIGDVMGHGIQAAATVGQLRASARAHITTDPSPSA VLARLDEAANRLEQGQIATAALAVLDPANARLTLASAGHLPPRQLPPTSCATRPWPYSAGWPATTTTPPCSPSWSTPWAP HDLAELEVIGPTGDLSVLAVVADSR
Sequences:
>Translated_585_residues MPLDAADAGEEYLAALEEIESYARAARLLTLESPPQQVAFRRWYVGSLVTQLRIAARGGVPEPVRTFEQYLLDTLDEVVR TQRTAERAARLQGVTAALALATTPEKVAEVVVSEGVTALGAFGGGLLVARDAGRLAVPGTVGYREEVVSMLRAERLDDRL PAADAIRGGMPVWLESRQDRDSRYPELAEREPNVVSMCALPLLVGDRVLGALRFSFDHPRLFDADERDFVLALAAQTALA VERARLFAAERRALERSAFLATLADRITTTLDPRRVLEQTTDLLVPRYAERAVAVLTDEPMTSIGDPSPRELALMRAVTQ TGTTTTTTTTDGDGDETVLVVPLTVGGRTVAVLAVLCHEDSPRARDEQDAIEEVARRAAVAVGNAQLYEQERRTALTLQR SLLPQRLPTIGGLSFAWRYLPGSAGALVGGDWYDVLPLDDGRVALVIGDVMGHGIQAAATVGQLRASARAHITTDPSPSA VLARLDEAANRLEQGQIATAALAVLDPANARLTLASAGHLPPRQLPPTSCATRPWPYSAGWPATTTTPPCSPSWSTPWAP HDLAELEVIGPTGDLSVLAVVADSR >Mature_584_residues PLDAADAGEEYLAALEEIESYARAARLLTLESPPQQVAFRRWYVGSLVTQLRIAARGGVPEPVRTFEQYLLDTLDEVVRT QRTAERAARLQGVTAALALATTPEKVAEVVVSEGVTALGAFGGGLLVARDAGRLAVPGTVGYREEVVSMLRAERLDDRLP AADAIRGGMPVWLESRQDRDSRYPELAEREPNVVSMCALPLLVGDRVLGALRFSFDHPRLFDADERDFVLALAAQTALAV ERARLFAAERRALERSAFLATLADRITTTLDPRRVLEQTTDLLVPRYAERAVAVLTDEPMTSIGDPSPRELALMRAVTQT GTTTTTTTTDGDGDETVLVVPLTVGGRTVAVLAVLCHEDSPRARDEQDAIEEVARRAAVAVGNAQLYEQERRTALTLQRS LLPQRLPTIGGLSFAWRYLPGSAGALVGGDWYDVLPLDDGRVALVIGDVMGHGIQAAATVGQLRASARAHITTDPSPSAV LARLDEAANRLEQGQIATAALAVLDPANARLTLASAGHLPPRQLPPTSCATRPWPYSAGWPATTTTPPCSPSWSTPWAPH DLAELEVIGPTGDLSVLAVVADSR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62773; Mature: 62642
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: PS01088 CAP_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLDAADAGEEYLAALEEIESYARAARLLTLESPPQQVAFRRWYVGSLVTQLRIAARGGV CCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC PEPVRTFEQYLLDTLDEVVRTQRTAERAARLQGVTAALALATTPEKVAEVVVSEGVTALG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH AFGGGLLVARDAGRLAVPGTVGYREEVVSMLRAERLDDRLPAADAIRGGMPVWLESRQDR HCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCCCCC DSRYPELAEREPNVVSMCALPLLVGDRVLGALRFSFDHPRLFDADERDFVLALAAQTALA CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHH VERARLFAAERRALERSAFLATLADRITTTLDPRRVLEQTTDLLVPRYAERAVAVLTDEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCEEEEEECCC MTSIGDPSPRELALMRAVTQTGTTTTTTTTDGDGDETVLVVPLTVGGRTVAVLAVLCHED HHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHCCC SPRARDEQDAIEEVARRAAVAVGNAQLYEQERRTALTLQRSLLPQRLPTIGGLSFAWRYL CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEC PGSAGALVGGDWYDVLPLDDGRVALVIGDVMGHGIQAAATVGQLRASARAHITTDPSPSA CCCCCCEECCCEEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCEEEECCCCHHH VLARLDEAANRLEQGQIATAALAVLDPANARLTLASAGHLPPRQLPPTSCATRPWPYSAG HHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC WPATTTTPPCSPSWSTPWAPHDLAELEVIGPTGDLSVLAVVADSR CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC >Mature Secondary Structure PLDAADAGEEYLAALEEIESYARAARLLTLESPPQQVAFRRWYVGSLVTQLRIAARGGV CCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCC PEPVRTFEQYLLDTLDEVVRTQRTAERAARLQGVTAALALATTPEKVAEVVVSEGVTALG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHH AFGGGLLVARDAGRLAVPGTVGYREEVVSMLRAERLDDRLPAADAIRGGMPVWLESRQDR HCCCCEEEEECCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEECCCCCC DSRYPELAEREPNVVSMCALPLLVGDRVLGALRFSFDHPRLFDADERDFVLALAAQTALA CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHH VERARLFAAERRALERSAFLATLADRITTTLDPRRVLEQTTDLLVPRYAERAVAVLTDEP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHCEEEEEECCC MTSIGDPSPRELALMRAVTQTGTTTTTTTTDGDGDETVLVVPLTVGGRTVAVLAVLCHED HHCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHCCC SPRARDEQDAIEEVARRAAVAVGNAQLYEQERRTALTLQRSLLPQRLPTIGGLSFAWRYL CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEC PGSAGALVGGDWYDVLPLDDGRVALVIGDVMGHGIQAAATVGQLRASARAHITTDPSPSA CCCCCCEECCCEEEEEECCCCCEEEEEECHHCCCHHHHHHHHHHHHCCCEEEECCCCHHH VLARLDEAANRLEQGQIATAALAVLDPANARLTLASAGHLPPRQLPPTSCATRPWPYSAG HHHHHHHHHHHHHCCCHHHHHHHEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC WPATTTTPPCSPSWSTPWAPHDLAELEVIGPTGDLSVLAVVADSR CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA