| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is sphX [H]
Identifier: 158318158
GI number: 158318158
Start: 7801163
End: 7803577
Strand: Direct
Name: sphX [H]
Synonym: Franean1_6423
Alternate gene names: 158318158
Gene position: 7801163-7803577 (Clockwise)
Preceding gene: 158318157
Following gene: 158318159
Centisome position: 86.85
GC content: 73.13
Gene sequence:
>2415_bases GTGGGGTATCAGCTCGGAATCGATCTGGGTGTATCCGAAACAACCGTCGCGGCCATCGAGGCGGGGTGGCCTGCCGTCGT TCCGATCGGCGGCTCCGCGTCCGTGCCGACAATTCTGCACATCGGCACGGACGGGACGGCACGCGGCGGCCGGATAGCCG CCCGGCTGGCCCGGAGGGATCCGGACCGGCACGCGGCGCGTTTCGTCGAACGGTTGGGAGAACCGGCGCCGATCCTCGTC GGCGGCGTCGGGTACAGCGCGTCCTCGCTGGTCGCGCGCTATCTCTCCTGGCTGGTGGATACCGTCACCCGGATGCGCGG GGAGGCACCGGAGCTGGTCGTCGTGACCGCCCCCGGCAGCTGGCCGGACCGGCGGCGGGAGGGGCTGGCCGACGCTCTGG CCCGCGTCGAGGCCGACGTCGCAATCACCGCGCGACCGTCCGCCGACGCGCTCGGCGCGCTGCTGACCCGCTCGGGCCGC GCGGCCCCCGGGCGCTACGTCGCCACGTTCGACCTGGGCTCGGACTGGTTCGAGGCCGCCATCCACACGGCGATGCCGTC CGGGTTCGTCGTCGCGGGCGGCCCGGTGGGCCTCTCCGACGTGACCACCGCCATGCTCGACGAGCTGCTGCGGGCGCACG TCGTCGCGGCGCTCCCCGCCGACGCCCCGGCGGCCGCGCTGTCGGCGTCGGCGCCGCTGCTGGCGGCCTGTGCCGTGGCA CGCGAGGACCTGGTGGACGACGAGACGGCGACCATCGAGGTCGCCACCGGCGAGGCCGGTGACGGCACCGGCACCGGCGA AGGCGGCACCGGCGGGAACAGCACCAGCGTCACCGTCAGCAGGGAGGAGTACGAGAACCTCGTCCGGCCGATGATCGAGG ACGCCGCGCGCGCCCTTGCCCGCGCCATCCGGTCCGTGCCGGCCATGCCCGAAGACGTGTCTCTTCTGGTGCTCCGGGGG CCGGGGGCCCGGCTCCCGCTCGTCGGCAAGGTGCTCGGCGAGTCACTCGGCGGAATCGGGCGGCACGAGACCCACCCGGA CTCCGACCTCGCGCTCGGCGCGGCGCTGCTGGCGGCGGCGGCGAACCCGACCGAGCCGGCCAGCTCGCAGACGGTGGTGC TCGGCCCGGCGGCGTACACGACGACGCCGCCACCGAGCATCCCGCCGGCGAGCAGGCCGCCCGCGGTCGGCTCACCCGCG GTCAGCTCACCGACGGTCAGCTCACCGGCGGACGTCCCGCCGGGGGCTGTCCTGACCGGCGTCGAGACCCAGGCGGTCGA TCCGGTCGAGCCGGCCCCGCCGGTCACGACGTGCCGGGCCCGGCACGACTCGGCGCGGAAGATTACCGCCGCCGCGGCCG CGCTCGCCGTGTTCGTCGCGGGCAGCGTGACCCTCGGCCTGGTGCTCGCCGACGATGACGGCGACTCCGCGGCCATCACG GCGGCCGACACCGGGCCGCTGCCGCCGTCCACCATCGATCAGCACCCGCAGTTCCCGGCGGACATGATGCGCTCCGCCGA GAAGGCCGCCGGCATCACCGCCGGGAACGCCGCTCCGGCGACGACAGCTCCCGACGGGCCGGAGACGGTGATCGCGACGG GGTCGGCCGAGGTCGCGCCGATCACCGGCACCGCCTACGCGATGTTCCGCGAGGCGCAGAAGGGGGTCACCGTCCGGGTC AGCGCGACCGACACCGACGACGGGTTCGCCAGGCTGTGCGCCGGTGACGCCGACATCGCCGGCGCGTCGTTCGCGCTCAC CGACCCGGCCTGCAAGGACAAGGTGGTCGGGTTCGAGATCGCGCACCACCTGCTGCCGATCGTGGTGCCGAAGACCAACA CCTGGGTGAAGTGCCTGACCACCGCGCAGATCGGCGCGATGTGGAAACGGGACTCCACCGTCACGAGCTGGAACCAGATC GACCCGTCGTTCCCGGCCGAGCCGGTGCGGCTGGTGGGCCCGGCGCCCGGGACCGTGCACGCGAAGGTCTTCCTGGCCAG CATGACCGGCGCCTCGGACAACACCCGTAAGTACCGCGAGGTCGAGCTGGACGAGGTCCCGGAGGAGGTCGAGTACGACC GCGGCGCGATCGGGTTTATGGACTACTCGAACTTCCAGACCGCGGGCGGGGACGTCCGCGCGATCCAGCTCGACGCGGGC CGTGGGTGCGTCGAGCCGAACGCGCTGACGGCGGGCACCGGGATGTACATGCCGCTGTGCAAGCCGCTGTATGTCTACGC GAGCAAGGAGTCGCTGCGGCGGCCCGCGGTCGCGGCCTTCATGAACTACTACATGGAGAACCAGAAGGACGTGACGTTCC GGGCGCACTTCGTCGCCCGGGACGACGCCACGGTCAGGGACAACACGGCGATCGTCCATGCCATGACGTCCGGAGTGGAA CCCGTCCGGACATAG
Upstream 100 bases:
>100_bases ACGACGTGTTCCGCGTCAATCGCGCCGATGCGCGGCTTCGCCCGCGCATTCCCCTTCGGTACCATCTGCGGGCTGGTGCA AGGTGCCATGGGGGGAAATC
Downstream 100 bases:
>100_bases CTGCTCCTTCGGCCCGCGCCGACGGCATGTGCCGCGTCCGGAAGGCGGACGCGGCACACCGCCGGTAACGTCGTCGCTGG CGGCTACTGGCGGCGATCGG
Product: putative phosphate ABC transporter phosphate-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 804; Mature: 803
Protein sequence:
>804_residues MGYQLGIDLGVSETTVAAIEAGWPAVVPIGGSASVPTILHIGTDGTARGGRIAARLARRDPDRHAARFVERLGEPAPILV GGVGYSASSLVARYLSWLVDTVTRMRGEAPELVVVTAPGSWPDRRREGLADALARVEADVAITARPSADALGALLTRSGR AAPGRYVATFDLGSDWFEAAIHTAMPSGFVVAGGPVGLSDVTTAMLDELLRAHVVAALPADAPAAALSASAPLLAACAVA REDLVDDETATIEVATGEAGDGTGTGEGGTGGNSTSVTVSREEYENLVRPMIEDAARALARAIRSVPAMPEDVSLLVLRG PGARLPLVGKVLGESLGGIGRHETHPDSDLALGAALLAAAANPTEPASSQTVVLGPAAYTTTPPPSIPPASRPPAVGSPA VSSPTVSSPADVPPGAVLTGVETQAVDPVEPAPPVTTCRARHDSARKITAAAAALAVFVAGSVTLGLVLADDDGDSAAIT AADTGPLPPSTIDQHPQFPADMMRSAEKAAGITAGNAAPATTAPDGPETVIATGSAEVAPITGTAYAMFREAQKGVTVRV SATDTDDGFARLCAGDADIAGASFALTDPACKDKVVGFEIAHHLLPIVVPKTNTWVKCLTTAQIGAMWKRDSTVTSWNQI DPSFPAEPVRLVGPAPGTVHAKVFLASMTGASDNTRKYREVELDEVPEEVEYDRGAIGFMDYSNFQTAGGDVRAIQLDAG RGCVEPNALTAGTGMYMPLCKPLYVYASKESLRRPAVAAFMNYYMENQKDVTFRAHFVARDDATVRDNTAIVHAMTSGVE PVRT
Sequences:
>Translated_804_residues MGYQLGIDLGVSETTVAAIEAGWPAVVPIGGSASVPTILHIGTDGTARGGRIAARLARRDPDRHAARFVERLGEPAPILV GGVGYSASSLVARYLSWLVDTVTRMRGEAPELVVVTAPGSWPDRRREGLADALARVEADVAITARPSADALGALLTRSGR AAPGRYVATFDLGSDWFEAAIHTAMPSGFVVAGGPVGLSDVTTAMLDELLRAHVVAALPADAPAAALSASAPLLAACAVA REDLVDDETATIEVATGEAGDGTGTGEGGTGGNSTSVTVSREEYENLVRPMIEDAARALARAIRSVPAMPEDVSLLVLRG PGARLPLVGKVLGESLGGIGRHETHPDSDLALGAALLAAAANPTEPASSQTVVLGPAAYTTTPPPSIPPASRPPAVGSPA VSSPTVSSPADVPPGAVLTGVETQAVDPVEPAPPVTTCRARHDSARKITAAAAALAVFVAGSVTLGLVLADDDGDSAAIT AADTGPLPPSTIDQHPQFPADMMRSAEKAAGITAGNAAPATTAPDGPETVIATGSAEVAPITGTAYAMFREAQKGVTVRV SATDTDDGFARLCAGDADIAGASFALTDPACKDKVVGFEIAHHLLPIVVPKTNTWVKCLTTAQIGAMWKRDSTVTSWNQI DPSFPAEPVRLVGPAPGTVHAKVFLASMTGASDNTRKYREVELDEVPEEVEYDRGAIGFMDYSNFQTAGGDVRAIQLDAG RGCVEPNALTAGTGMYMPLCKPLYVYASKESLRRPAVAAFMNYYMENQKDVTFRAHFVARDDATVRDNTAIVHAMTSGVE PVRT >Mature_803_residues GYQLGIDLGVSETTVAAIEAGWPAVVPIGGSASVPTILHIGTDGTARGGRIAARLARRDPDRHAARFVERLGEPAPILVG GVGYSASSLVARYLSWLVDTVTRMRGEAPELVVVTAPGSWPDRRREGLADALARVEADVAITARPSADALGALLTRSGRA APGRYVATFDLGSDWFEAAIHTAMPSGFVVAGGPVGLSDVTTAMLDELLRAHVVAALPADAPAAALSASAPLLAACAVAR EDLVDDETATIEVATGEAGDGTGTGEGGTGGNSTSVTVSREEYENLVRPMIEDAARALARAIRSVPAMPEDVSLLVLRGP GARLPLVGKVLGESLGGIGRHETHPDSDLALGAALLAAAANPTEPASSQTVVLGPAAYTTTPPPSIPPASRPPAVGSPAV SSPTVSSPADVPPGAVLTGVETQAVDPVEPAPPVTTCRARHDSARKITAAAAALAVFVAGSVTLGLVLADDDGDSAAITA ADTGPLPPSTIDQHPQFPADMMRSAEKAAGITAGNAAPATTAPDGPETVIATGSAEVAPITGTAYAMFREAQKGVTVRVS ATDTDDGFARLCAGDADIAGASFALTDPACKDKVVGFEIAHHLLPIVVPKTNTWVKCLTTAQIGAMWKRDSTVTSWNQID PSFPAEPVRLVGPAPGTVHAKVFLASMTGASDNTRKYREVELDEVPEEVEYDRGAIGFMDYSNFQTAGGDVRAIQLDAGR GCVEPNALTAGTGMYMPLCKPLYVYASKESLRRPAVAAFMNYYMENQKDVTFRAHFVARDDATVRDNTAIVHAMTSGVEP VRT
Specific function: May be involved in the system for phosphate transport across the cytoplasmic membrane [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 320 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 500 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stati
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 82790; Mature: 82659
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYQLGIDLGVSETTVAAIEAGWPAVVPIGGSASVPTILHIGTDGTARGGRIAARLARRD CCEEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHCC PDRHAARFVERLGEPAPILVGGVGYSASSLVARYLSWLVDTVTRMRGEAPELVVVTAPGS CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC WPDRRREGLADALARVEADVAITARPSADALGALLTRSGRAAPGRYVATFDLGSDWFEAA CHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHH IHTAMPSGFVVAGGPVGLSDVTTAMLDELLRAHVVAALPADAPAAALSASAPLLAACAVA HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHH REDLVDDETATIEVATGEAGDGTGTGEGGTGGNSTSVTVSREEYENLVRPMIEDAARALA HHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH RAIRSVPAMPEDVSLLVLRGPGARLPLVGKVLGESLGGIGRHETHPDSDLALGAALLAAA HHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC ANPTEPASSQTVVLGPAAYTTTPPPSIPPASRPPAVGSPAVSSPTVSSPADVPPGAVLTG CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC VETQAVDPVEPAPPVTTCRARHDSARKITAAAAALAVFVAGSVTLGLVLADDDGDSAAIT CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEE AADTGPLPPSTIDQHPQFPADMMRSAEKAAGITAGNAAPATTAPDGPETVIATGSAEVAP ECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE ITGTAYAMFREAQKGVTVRVSATDTDDGFARLCAGDADIAGASFALTDPACKDKVVGFEI ECCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCHHCCHHHHHH AHHLLPIVVPKTNTWVKCLTTAQIGAMWKRDSTVTSWNQIDPSFPAEPVRLVGPAPGTVH HHHHEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEE AKVFLASMTGASDNTRKYREVELDEVPEEVEYDRGAIGFMDYSNFQTAGGDVRAIQLDAG EEEEEEEECCCCCCCCHHEECCHHHCCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECC RGCVEPNALTAGTGMYMPLCKPLYVYASKESLRRPAVAAFMNYYMENQKDVTFRAHFVAR CCCCCCCCEECCCCCHHHCCCEEEEEECHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEEC DDATVRDNTAIVHAMTSGVEPVRT CCCCCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure GYQLGIDLGVSETTVAAIEAGWPAVVPIGGSASVPTILHIGTDGTARGGRIAARLARRD CEEEEEECCCCCCEEEEEECCCCEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHCC PDRHAARFVERLGEPAPILVGGVGYSASSLVARYLSWLVDTVTRMRGEAPELVVVTAPGS CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC WPDRRREGLADALARVEADVAITARPSADALGALLTRSGRAAPGRYVATFDLGSDWFEAA CHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHH IHTAMPSGFVVAGGPVGLSDVTTAMLDELLRAHVVAALPADAPAAALSASAPLLAACAVA HHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHH REDLVDDETATIEVATGEAGDGTGTGEGGTGGNSTSVTVSREEYENLVRPMIEDAARALA HHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH RAIRSVPAMPEDVSLLVLRGPGARLPLVGKVLGESLGGIGRHETHPDSDLALGAALLAAA HHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC ANPTEPASSQTVVLGPAAYTTTPPPSIPPASRPPAVGSPAVSSPTVSSPADVPPGAVLTG CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC VETQAVDPVEPAPPVTTCRARHDSARKITAAAAALAVFVAGSVTLGLVLADDDGDSAAIT CCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCEEEE AADTGPLPPSTIDQHPQFPADMMRSAEKAAGITAGNAAPATTAPDGPETVIATGSAEVAP ECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE ITGTAYAMFREAQKGVTVRVSATDTDDGFARLCAGDADIAGASFALTDPACKDKVVGFEI ECCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEECCCCHHCCHHHHHH AHHLLPIVVPKTNTWVKCLTTAQIGAMWKRDSTVTSWNQIDPSFPAEPVRLVGPAPGTVH HHHHEEEEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEE AKVFLASMTGASDNTRKYREVELDEVPEEVEYDRGAIGFMDYSNFQTAGGDVRAIQLDAG EEEEEEEECCCCCCCCHHEECCHHHCCHHHCCCCCCEEEEECCCCCCCCCCEEEEEEECC RGCVEPNALTAGTGMYMPLCKPLYVYASKESLRRPAVAAFMNYYMENQKDVTFRAHFVAR CCCCCCCCEECCCCCHHHCCCEEEEEECHHHHCCHHHHHHHHHHHCCCCCEEEEEEEEEC DDATVRDNTAIVHAMTSGVEPVRT CCCCCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]