| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318100
Identifier: 158318100
GI number: 158318100
Start: 7725346
End: 7726779
Strand: Reverse
Name: 158318100
Synonym: Franean1_6364
Alternate gene names: NA
Gene position: 7726779-7725346 (Counterclockwise)
Preceding gene: 158318102
Following gene: 158318099
Centisome position: 86.02
GC content: 72.04
Gene sequence:
>1434_bases ATGTCCTTGAAACGAGCAGTCCGGAGCGCGGCGCTGGTGGCGGTGGCCGCCGCCACGTTCGCCGGCTGCGTACCGGTCAG CCCGGGCGGCGGAGGCGGCTCCGTCCCGACCGCCTCGCCGTCCATCCCCCCGACCGCGCCCTCGTCGCCGTCCGGCACTC CGGCAGGCACTCCGACCGCCTCGCCGTCGGTCCGGCCGGCCGTGCCGTCGTCGCCGACCGGCACCCCGGTGGGCACCCCG ACGCCTTCGCGGACCACGACCCCGTCCGGACCGACGTCCGGTGACTGCGGGCGGACGTCGGGAGCCTCACCGGCGACGAG GATCACCGAGGTCGGCCTTGGGTCGCCGGTGGTCAGCTTCGCGCCGCAGGGCGACACGGACCCGTTGCCGACCGCGATCG CCGCCGCGCCGGGCGGGGGATCCTGGCTGGCCTGGCTGGGCACCGACTCCAAGGTGCGCCTCGGCAAACTGGACTGCGGA GACCAGCTGGTCGGTACTCCCACATCCCTCGACGCGGTCGACCTGCAGGACGTCAAGGCCGATGCGGACGGTGTCGTGGT CCTGCTGACCCGTCCCGGCCCGCAGGGCAGCGGGACGCTGTGCGGCGGGACGTCCAGCCCGACCAGGACCATGTGGATGG TCCGCCTCGACAACACCGGCAGACAGCTGTGGGAGCGTCAGGTCACCAACCTGAGCAGCAGCCGCGGCGGCTACGACCCC GGGGCTCTGTTCGTCTGGTGGTACAACCACCACGGCACCCTGGCCTACGACGGCACCAACTACGCCGCCTACTTCGAGGC GGCGATCACCGTGGCCAACGGCGGCTGCGTCGACATCCACGAGGGTGACCGGATGCAGGTGGTCAACGCCGCCACCGGCG CCCTGGTCTCCGGGCACGACAGCTTCGACTGGGGCTGCAGCCACGCCTGGGACTCCCACATCATCTGGGACGCCCGCACC GGCCACTTCGCGATGGTCTGCGCCACGGACAACAACTGCCGCATCGCCCGCCCCGGCACCGGCCAGACCGTCGTGCCCGG GGTCTGTGACGGAACCCTGTTCGGCGGCAACATCGTGCTGGCCGGCACCCCGGGCTACTGGACCGCGTGGAGCAACGGCA ACCAGGTACGGCTGGAGCACTTCTCCACGGGCGCGTCCGACCGGACGGTCCTCACCGCCGACCGGACCCAGCACTCGCAC CTGGTCGGCTACGGCGCCGGCAGGATGCTCCTGACCTGGAAGTCCGGAACCTCGACCGCCGCCCAGGCGTACGACACCAC CAGTGGCGGCACCGTGGGCGGCCAGTTCACGATCGCCGTGCCGGACCACACCTACGTCGAGGCCAAGGCCTACCCCGACG GCAGCGTCGCCTTCCCCGCCGCCGGCACTTCCAACACGTCCATCCGGGTCGTTCGGATAATGCCGCTCACCTGA
Upstream 100 bases:
>100_bases AACGGATGCACTAGAGGGAAAAATTCCGGCGAATCGGCAACCATGGACAGTCGCGGAACGACTTTCCATGGGGAGGGGCC CGATTCGACGGAGAGGTCAC
Downstream 100 bases:
>100_bases CACCGGTGCCGGTGCCGGTGCGTGCACGGACACCTACCAGGAGGCGCAGTGTTCGTGGCAGAATGCCTATCGTGCACGGA CAGGACGGTGCGGCACCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MSLKRAVRSAALVAVAAATFAGCVPVSPGGGGGSVPTASPSIPPTAPSSPSGTPAGTPTASPSVRPAVPSSPTGTPVGTP TPSRTTTPSGPTSGDCGRTSGASPATRITEVGLGSPVVSFAPQGDTDPLPTAIAAAPGGGSWLAWLGTDSKVRLGKLDCG DQLVGTPTSLDAVDLQDVKADADGVVVLLTRPGPQGSGTLCGGTSSPTRTMWMVRLDNTGRQLWERQVTNLSSSRGGYDP GALFVWWYNHHGTLAYDGTNYAAYFEAAITVANGGCVDIHEGDRMQVVNAATGALVSGHDSFDWGCSHAWDSHIIWDART GHFAMVCATDNNCRIARPGTGQTVVPGVCDGTLFGGNIVLAGTPGYWTAWSNGNQVRLEHFSTGASDRTVLTADRTQHSH LVGYGAGRMLLTWKSGTSTAAQAYDTTSGGTVGGQFTIAVPDHTYVEAKAYPDGSVAFPAAGTSNTSIRVVRIMPLT
Sequences:
>Translated_477_residues MSLKRAVRSAALVAVAAATFAGCVPVSPGGGGGSVPTASPSIPPTAPSSPSGTPAGTPTASPSVRPAVPSSPTGTPVGTP TPSRTTTPSGPTSGDCGRTSGASPATRITEVGLGSPVVSFAPQGDTDPLPTAIAAAPGGGSWLAWLGTDSKVRLGKLDCG DQLVGTPTSLDAVDLQDVKADADGVVVLLTRPGPQGSGTLCGGTSSPTRTMWMVRLDNTGRQLWERQVTNLSSSRGGYDP GALFVWWYNHHGTLAYDGTNYAAYFEAAITVANGGCVDIHEGDRMQVVNAATGALVSGHDSFDWGCSHAWDSHIIWDART GHFAMVCATDNNCRIARPGTGQTVVPGVCDGTLFGGNIVLAGTPGYWTAWSNGNQVRLEHFSTGASDRTVLTADRTQHSH LVGYGAGRMLLTWKSGTSTAAQAYDTTSGGTVGGQFTIAVPDHTYVEAKAYPDGSVAFPAAGTSNTSIRVVRIMPLT >Mature_476_residues SLKRAVRSAALVAVAAATFAGCVPVSPGGGGGSVPTASPSIPPTAPSSPSGTPAGTPTASPSVRPAVPSSPTGTPVGTPT PSRTTTPSGPTSGDCGRTSGASPATRITEVGLGSPVVSFAPQGDTDPLPTAIAAAPGGGSWLAWLGTDSKVRLGKLDCGD QLVGTPTSLDAVDLQDVKADADGVVVLLTRPGPQGSGTLCGGTSSPTRTMWMVRLDNTGRQLWERQVTNLSSSRGGYDPG ALFVWWYNHHGTLAYDGTNYAAYFEAAITVANGGCVDIHEGDRMQVVNAATGALVSGHDSFDWGCSHAWDSHIIWDARTG HFAMVCATDNNCRIARPGTGQTVVPGVCDGTLFGGNIVLAGTPGYWTAWSNGNQVRLEHFSTGASDRTVLTADRTQHSHL VGYGAGRMLLTWKSGTSTAAQAYDTTSGGTVGGQFTIAVPDHTYVEAKAYPDGSVAFPAAGTSNTSIRVVRIMPLT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48712; Mature: 48581
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKRAVRSAALVAVAAATFAGCVPVSPGGGGGSVPTASPSIPPTAPSSPSGTPAGTPTA CCHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSVRPAVPSSPTGTPVGTPTPSRTTTPSGPTSGDCGRTSGASPATRITEVGLGSPVVSF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEE APQGDTDPLPTAIAAAPGGGSWLAWLGTDSKVRLGKLDCGDQLVGTPTSLDAVDLQDVKA CCCCCCCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCCEECCCCCCCCEEHHHHCC DADGVVVLLTRPGPQGSGTLCGGTSSPTRTMWMVRLDNTGRQLWERQVTNLSSSRGGYDP CCCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCC GALFVWWYNHHGTLAYDGTNYAAYFEAAITVANGGCVDIHEGDRMQVVNAATGALVSGHD CEEEEEEECCCCEEEECCCCEEEEEEEEEEEECCCEEEECCCCEEEEEECCCCEEEECCC SFDWGCSHAWDSHIIWDARTGHFAMVCATDNNCRIARPGTGQTVVPGVCDGTLFGGNIVL CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEECCCCCCEECCCCCCCEEECCEEEE AGTPGYWTAWSNGNQVRLEHFSTGASDRTVLTADRTQHSHLVGYGAGRMLLTWKSGTSTA ECCCCCEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCH AQAYDTTSGGTVGGQFTIAVPDHTYVEAKAYPDGSVAFPAAGTSNTSIRVVRIMPLT HHEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCEEECCCCCCCCEEEEEEEEECC >Mature Secondary Structure SLKRAVRSAALVAVAAATFAGCVPVSPGGGGGSVPTASPSIPPTAPSSPSGTPAGTPTA CHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SPSVRPAVPSSPTGTPVGTPTPSRTTTPSGPTSGDCGRTSGASPATRITEVGLGSPVVSF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEE APQGDTDPLPTAIAAAPGGGSWLAWLGTDSKVRLGKLDCGDQLVGTPTSLDAVDLQDVKA CCCCCCCCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCCEECCCCCCCCEEHHHHCC DADGVVVLLTRPGPQGSGTLCGGTSSPTRTMWMVRLDNTGRQLWERQVTNLSSSRGGYDP CCCCEEEEEECCCCCCCCEEECCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCCCCC GALFVWWYNHHGTLAYDGTNYAAYFEAAITVANGGCVDIHEGDRMQVVNAATGALVSGHD CEEEEEEECCCCEEEECCCCEEEEEEEEEEEECCCEEEECCCCEEEEEECCCCEEEECCC SFDWGCSHAWDSHIIWDARTGHFAMVCATDNNCRIARPGTGQTVVPGVCDGTLFGGNIVL CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEECCCCCCEECCCCCCCEEECCEEEE AGTPGYWTAWSNGNQVRLEHFSTGASDRTVLTADRTQHSHLVGYGAGRMLLTWKSGTSTA ECCCCCEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCEEEEECCCEEEEEECCCCCCH AQAYDTTSGGTVGGQFTIAVPDHTYVEAKAYPDGSVAFPAAGTSNTSIRVVRIMPLT HHEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCEEECCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA