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The map label for this gene is sigK [H]

Identifier: 158318099

GI number: 158318099

Start: 7724606

End: 7725283

Strand: Reverse

Name: sigK [H]

Synonym: Franean1_6363

Alternate gene names: 158318099

Gene position: 7725283-7724606 (Counterclockwise)

Preceding gene: 158318100

Following gene: 158318098

Centisome position: 86.01

GC content: 74.63

Gene sequence:

>678_bases
ATGCCTATCGTGCACGGACAGGACGGTGCGGCACCCGTGACGCGCCGGCCGTCAGCGGCCGGCACCGGCGGCGGCGCACC
TACACCTGCCCGCACGCCGGCTGCGGCCCGGCAGCCGCTTTCGCGGCGAGAGGTCGTCGAGCTGCACGGCCATCTGGTCG
CCGGGAATCCCACCGCGCTCGCCGTCGTCCACGAGAGGTACGCCCGCTACCTGCTTGCCGTCGCCACGCGGGTGACCGGT
GACGCCGACGCGGCCCGGGACGTCCTCCAGGAGGTGCTGGTCGCGTTCTGGCAGCATCCGCTCCGGTTCGACCCGGACCG
CGGGGAGCTGCGCACCTGGCTCGCGGTACTCGCCCATCGGCGCGCCGTCGACTGGGTCCGCCGGGAGATCGCCCGGCGCC
CTACCGACCTGGTCGCGCGGGCCCTCGCCGAGCAGTCGGACGGCCCGGCGGCCGACCGCGACTTCCTCGCGCGGGAGGAC
GCCGACGCCGTGCGGGCCGCCGTCGCCGCGTTACCCGTGAAGCTGCGCGAGGTGGTGGAGTTGGCGTACTACAGGGAGTT
GACCTACCGTGAGGTGGCCATTCGGCTCGCCATCCCGGAGGGGACGGCAAAGTCGCGCATGCGAGCGGCCCTGTCAGCCC
TCGCGCTGGCCCTCACCCGCCTGGGAGCCGCCCCGTGA

Upstream 100 bases:

>100_bases
CGTCCATCCGGGTCGTTCGGATAATGCCGCTCACCTGACACCGGTGCCGGTGCCGGTGCGTGCACGGACACCTACCAGGA
GGCGCAGTGTTCGTGGCAGA

Downstream 100 bases:

>100_bases
CGGTCGACCCGACGGTCGTGCCCACACCGGAACACTGTGTGACGGCGCTGCTGGACGCGTACGTGGTGGGTGAGTGCACG
GCCGCCGCGGCGGGCGCCAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPIVHGQDGAAPVTRRPSAAGTGGGAPTPARTPAAARQPLSRREVVELHGHLVAGNPTALAVVHERYARYLLAVATRVTG
DADAARDVLQEVLVAFWQHPLRFDPDRGELRTWLAVLAHRRAVDWVRREIARRPTDLVARALAEQSDGPAADRDFLARED
ADAVRAAVAALPVKLREVVELAYYRELTYREVAIRLAIPEGTAKSRMRAALSALALALTRLGAAP

Sequences:

>Translated_225_residues
MPIVHGQDGAAPVTRRPSAAGTGGGAPTPARTPAAARQPLSRREVVELHGHLVAGNPTALAVVHERYARYLLAVATRVTG
DADAARDVLQEVLVAFWQHPLRFDPDRGELRTWLAVLAHRRAVDWVRREIARRPTDLVARALAEQSDGPAADRDFLARED
ADAVRAAVAALPVKLREVVELAYYRELTYREVAIRLAIPEGTAKSRMRAALSALALALTRLGAAP
>Mature_224_residues
PIVHGQDGAAPVTRRPSAAGTGGGAPTPARTPAAARQPLSRREVVELHGHLVAGNPTALAVVHERYARYLLAVATRVTGD
ADAARDVLQEVLVAFWQHPLRFDPDRGELRTWLAVLAHRRAVDWVRREIARRPTDLVARALAEQSDGPAADRDFLAREDA
DAVRAAVAALPVKLREVVELAYYRELTYREVAIRLAIPEGTAKSRMRAALSALALALTRLGAAP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 24370; Mature: 24239

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIVHGQDGAAPVTRRPSAAGTGGGAPTPARTPAAARQPLSRREVVELHGHLVAGNPTAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCEEEECCCHHH
AVVHERYARYLLAVATRVTGDADAARDVLQEVLVAFWQHPLRFDPDRGELRTWLAVLAHR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
RAVDWVRREIARRPTDLVARALAEQSDGPAADRDFLAREDADAVRAAVAALPVKLREVVE
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LAYYRELTYREVAIRLAIPEGTAKSRMRAALSALALALTRLGAAP
HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PIVHGQDGAAPVTRRPSAAGTGGGAPTPARTPAAARQPLSRREVVELHGHLVAGNPTAL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHCEEEECCCHHH
AVVHERYARYLLAVATRVTGDADAARDVLQEVLVAFWQHPLRFDPDRGELRTWLAVLAHR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
RAVDWVRREIARRPTDLVARALAEQSDGPAADRDFLAREDADAVRAAVAALPVKLREVVE
HHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LAYYRELTYREVAIRLAIPEGTAKSRMRAALSALALALTRLGAAP
HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA