| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318070
Identifier: 158318070
GI number: 158318070
Start: 7688646
End: 7690112
Strand: Direct
Name: 158318070
Synonym: Franean1_6330
Alternate gene names: NA
Gene position: 7688646-7690112 (Clockwise)
Preceding gene: 158318069
Following gene: 158318072
Centisome position: 85.6
GC content: 66.12
Gene sequence:
>1467_bases ATGACGCTACCCCGCACGGTCGCCGACGTCCTGGCCCGCCATGTGACGTTCAAGGTGGAGTGCATCGACCGGATGTACCT CAACGTCTACATCCCCCAGTTGCAGTTCCCGCTGGGGCTGATGGGGTTCCTGTCCCGCCGGCTGGGGATGCGAGTCACCT CGACAGCACCGCTGGCGTCGATCACCGAGCGGTTCGTTACCGCGGTCCGCCGGTTCGCCGTCGACCACGAGATCCCGCTG GTCGACTTCGCCAGGGGCCAGCGGAAGGACGACGTGATGCACGAACATCTGTCCCGGTTCACCAAGCCGGAAGGAGTGGT GTTCGTCGGCCGGGCGCAGGAGAAGACCCCGCTGTTCCGGACCGAGAAACGCCGCGACAGCGAGGGGAAGACCTACCCGT GGATCGTGAAGACCACCGGGGTCGTCAACCACTTCTACTTCTACTGCGTCGACGACGACTTCGGCCCGTTCTTCCTCAAG TTCTGCTCCTACTTCCCCTACAACGCCAAGCTCTGCCTGAACGGCAACCACTGGGCGCAGCGGCAGGCCGCGAAATCGGG GATCGGGTTCACCCCGATGGATAACGCCTTCGCCGCGGTCGACGACCCGGCCGCGCTCCAGCGGATCTACGATTCCCTCG GCCCCGAGCAGATCGACGGGCTGCTGCGCAAGTGGTTGAAAATCCTGCCGCACCCGTTCACCGGCGACGACCAGGACGCC GGCTACACCTACGACGTCTCGGTCCTGCAAGCCGAGTTCTCCCTGACCCAGACCCTCGACCGCCCACTGTCCGGACGGGT CTTCTTCGAACAGGTTATCCGGGACAACCTCGACCTCGGACGGCCCGACCAGGTCAGCCTCATCTTCGACCGGGAACTAC GACGCGGCAAGAAACGACCGACCCCGGCCGGTTCCGCACCCGCGTGCTCACCGAAGGCGTCACCCCCAGCCTGCACGTCG ACTACAAACACGCCACGATCAAGCAGTACCACAAGGAAGGACGAGCGCTACGCACCGAAACCACGATCAACGACACCCGC GATTTCCGCATCGGGAAGCCGCTGGTCAACCTGCGTCCTCAAGCAGGTCGACTTCCAGGCCAACCGACGTCTCCTCGACG TCCAGACCATCAGCCACGACCCGACCGACGGCCAGGCCGCCCTCACCACTGTCACCGATCCCGTCCTCACCACCACCGGA CGCCGCGTCGCCGGCCTACGCTTCACCGACCCCCGCGCCCAGGCACTGCTGTCCGCGATCCTCGTCTTCCGCCTCCTTAC GACCTGCGCCGACTACGCCCGCACGGCCTCATCGAACGCATCCCCGGCACCCACCGCTACCAGCCCACCCGCACCGGCCA GCGGCACGCCCTGTTCCTCACCCGTGTCCACAACCGACTCCTCCGCACCGGCCTCGCCGAACTCGCCGACACCCATCCCG GCGACCCGCCACCACTTCGACGAGTAG
Upstream 100 bases:
>100_bases GACACCTTGCCCCAACGGATCACAAAGATGAACCCGTTGTGATGCCGCGCTGACGGCGGCGGTTGGCCGGTGGCCGGACC GTCCCGGACCGGAGCTGACG
Downstream 100 bases:
>100_bases CCGACGCTTACGAGAAAGCCGTCGACCAACTCGTCCAGCACGGCGGACTCGCAGCCTGACCCGCGTGCACAGAACTTGAC TCATCCTTCGCGGCTTCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 488; Mature: 487
Protein sequence:
>488_residues MTLPRTVADVLARHVTFKVECIDRMYLNVYIPQLQFPLGLMGFLSRRLGMRVTSTAPLASITERFVTAVRRFAVDHEIPL VDFARGQRKDDVMHEHLSRFTKPEGVVFVGRAQEKTPLFRTEKRRDSEGKTYPWIVKTTGVVNHFYFYCVDDDFGPFFLK FCSYFPYNAKLCLNGNHWAQRQAAKSGIGFTPMDNAFAAVDDPAALQRIYDSLGPEQIDGLLRKWLKILPHPFTGDDQDA GYTYDVSVLQAEFSLTQTLDRPLSGRVFFEQVIRDNLDLGRPDQVSLIFDRELRRGKKRPTPAGSAPACSPKASPPACTS TTNTPRSSSTTRKDERYAPKPRSTTPAISASGSRWSTCVLKQVDFQANRRLLDVQTISHDPTDGQAALTTVTDPVLTTTG RRVAGLRFTDPRAQALLSAILVFRLLTTCADYARTASSNASPAPTATSPPAPASGTPCSSPVSTTDSSAPASPNSPTPIP ATRHHFDE
Sequences:
>Translated_488_residues MTLPRTVADVLARHVTFKVECIDRMYLNVYIPQLQFPLGLMGFLSRRLGMRVTSTAPLASITERFVTAVRRFAVDHEIPL VDFARGQRKDDVMHEHLSRFTKPEGVVFVGRAQEKTPLFRTEKRRDSEGKTYPWIVKTTGVVNHFYFYCVDDDFGPFFLK FCSYFPYNAKLCLNGNHWAQRQAAKSGIGFTPMDNAFAAVDDPAALQRIYDSLGPEQIDGLLRKWLKILPHPFTGDDQDA GYTYDVSVLQAEFSLTQTLDRPLSGRVFFEQVIRDNLDLGRPDQVSLIFDRELRRGKKRPTPAGSAPACSPKASPPACTS TTNTPRSSSTTRKDERYAPKPRSTTPAISASGSRWSTCVLKQVDFQANRRLLDVQTISHDPTDGQAALTTVTDPVLTTTG RRVAGLRFTDPRAQALLSAILVFRLLTTCADYARTASSNASPAPTATSPPAPASGTPCSSPVSTTDSSAPASPNSPTPIP ATRHHFDE >Mature_487_residues TLPRTVADVLARHVTFKVECIDRMYLNVYIPQLQFPLGLMGFLSRRLGMRVTSTAPLASITERFVTAVRRFAVDHEIPLV DFARGQRKDDVMHEHLSRFTKPEGVVFVGRAQEKTPLFRTEKRRDSEGKTYPWIVKTTGVVNHFYFYCVDDDFGPFFLKF CSYFPYNAKLCLNGNHWAQRQAAKSGIGFTPMDNAFAAVDDPAALQRIYDSLGPEQIDGLLRKWLKILPHPFTGDDQDAG YTYDVSVLQAEFSLTQTLDRPLSGRVFFEQVIRDNLDLGRPDQVSLIFDRELRRGKKRPTPAGSAPACSPKASPPACTST TNTPRSSSTTRKDERYAPKPRSTTPAISASGSRWSTCVLKQVDFQANRRLLDVQTISHDPTDGQAALTTVTDPVLTTTGR RVAGLRFTDPRAQALLSAILVFRLLTTCADYARTASSNASPAPTATSPPAPASGTPCSSPVSTTDSSAPASPNSPTPIPA TRHHFDE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53936; Mature: 53804
Theoretical pI: Translated: 9.33; Mature: 9.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLPRTVADVLARHVTFKVECIDRMYLNVYIPQLQFPLGLMGFLSRRLGMRVTSTAPLAS CCCCHHHHHHHHHHHEEEEHHHHHHEEEEEECCHHCHHHHHHHHHHHHCCEECCCCCHHH ITERFVTAVRRFAVDHEIPLVDFARGQRKDDVMHEHLSRFTKPEGVVFVGRAQEKTPLFR HHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH TEKRRDSEGKTYPWIVKTTGVVNHFYFYCVDDDFGPFFLKFCSYFPYNAKLCLNGNHWAQ HHHCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCCHHHH RQAAKSGIGFTPMDNAFAAVDDPAALQRIYDSLGPEQIDGLLRKWLKILPHPFTGDDQDA HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC GYTYDVSVLQAEFSLTQTLDRPLSGRVFFEQVIRDNLDLGRPDQVSLIFDRELRRGKKRP CEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECHHHHCCCCCC TPAGSAPACSPKASPPACTSTTNTPRSSSTTRKDERYAPKPRSTTPAISASGSRWSTCVL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHH KQVDFQANRRLLDVQTISHDPTDGQAALTTVTDPVLTTTGRRVAGLRFTDPRAQALLSAI HHHHHHHCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCEEECEEECCHHHHHHHHHH LVFRLLTTCADYARTASSNASPAPTATSPPAPASGTPCSSPVSTTDSSAPASPNSPTPIP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATRHHFDE CCCCCCCC >Mature Secondary Structure TLPRTVADVLARHVTFKVECIDRMYLNVYIPQLQFPLGLMGFLSRRLGMRVTSTAPLAS CCCHHHHHHHHHHHEEEEHHHHHHEEEEEECCHHCHHHHHHHHHHHHCCEECCCCCHHH ITERFVTAVRRFAVDHEIPLVDFARGQRKDDVMHEHLSRFTKPEGVVFVGRAQEKTPLFR HHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH TEKRRDSEGKTYPWIVKTTGVVNHFYFYCVDDDFGPFFLKFCSYFPYNAKLCLNGNHWAQ HHHCCCCCCCCCCEEEEECCCEEEEEEEEEECCCCHHHHHHHHCCCCCCEEEECCCHHHH RQAAKSGIGFTPMDNAFAAVDDPAALQRIYDSLGPEQIDGLLRKWLKILPHPFTGDDQDA HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC GYTYDVSVLQAEFSLTQTLDRPLSGRVFFEQVIRDNLDLGRPDQVSLIFDRELRRGKKRP CEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECHHHHCCCCCC TPAGSAPACSPKASPPACTSTTNTPRSSSTTRKDERYAPKPRSTTPAISASGSRWSTCVL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHH KQVDFQANRRLLDVQTISHDPTDGQAALTTVTDPVLTTTGRRVAGLRFTDPRAQALLSAI HHHHHHHCCEEEEEEECCCCCCCCCEEEEEECCCHHHCCCCEEECEEECCHHHHHHHHHH LVFRLLTTCADYARTASSNASPAPTATSPPAPASGTPCSSPVSTTDSSAPASPNSPTPIP HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC ATRHHFDE CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA