| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318016
Identifier: 158318016
GI number: 158318016
Start: 7624061
End: 7624729
Strand: Direct
Name: 158318016
Synonym: Franean1_6276
Alternate gene names: NA
Gene position: 7624061-7624729 (Clockwise)
Preceding gene: 158318015
Following gene: 158318017
Centisome position: 84.88
GC content: 74.14
Gene sequence:
>669_bases ATGAGTTCTGTGCACCCAAGGAGTGTGCACCCAGAGGTTGTGCACACCGATATGCCGCAGCCGGCGGGCGAACGTTCGCT CTCTCGCGCGCGCCCGCGCGATACGGCCCCGTGGGCGCGCGTCCCGCCCGACGAACGGGCGTACCTGCGCGCGGGAGTTG GCTCACGGCTGGAGGCAGCCCGCCGGGCTGCTGGTCTGTCCCGCCTGGCGCTCGCCCGTCGGGTGGGGTGCAGCGCCGGC CTGGTCCGGCACCTTGAGCGCGGGACCTGCCGACCCCGGGAGGCTGCCGTCCGGTGGCTGGCGTACGCGCTGGAGCCGGA CGACCCGGCCCCACTGCGGGAAGCGCTGCTGCAGGCCGCGGGGGATTCGCTGCGGCCCGACACCTCGGGCACGGCGCGGG CCTGGACCAGGCGTTGTGAGCATGCGTTCCTCGCAGGGCATTGGCCGGTGCCGTCCGACGTCGCCCAGGCCATCGCGGCG CACCAGGCTGCAGCTGCGGCCAACCGTGAGGCTCTGGCCATCCTCGACCGGCCCGGTGCCATGCGCAGCGTGCGGGCGCT GGACCAGGCGTCCGCGCTGCTGGACCGGGCACTCGTCCTCGCGGAACAGGCGGGCCCACCGGTCACCGTCATCGTCGGCC GTCACCGCCGCACCTACCACGGGATTTGA
Upstream 100 bases:
>100_bases AGTACACCTGCCCAAGCTGCCGCACGGAGGCCACCCGCGACCAGCACGCCGCGCTCGCTGTCACCCACCGGACGTACTGC CTCACGCGGACGGCCACCGC
Downstream 100 bases:
>100_bases TCAGGAGTGAAACCGCGTTGCTCGACGACTTCGAGGCGGCCACAGCTGGCCGCACCTTGCCGGCAGGCTACGTCCTGGAC GCCGGCGTCCTCGGTGTAGA
Product: XRE family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSSVHPRSVHPEVVHTDMPQPAGERSLSRARPRDTAPWARVPPDERAYLRAGVGSRLEAARRAAGLSRLALARRVGCSAG LVRHLERGTCRPREAAVRWLAYALEPDDPAPLREALLQAAGDSLRPDTSGTARAWTRRCEHAFLAGHWPVPSDVAQAIAA HQAAAAANREALAILDRPGAMRSVRALDQASALLDRALVLAEQAGPPVTVIVGRHRRTYHGI
Sequences:
>Translated_222_residues MSSVHPRSVHPEVVHTDMPQPAGERSLSRARPRDTAPWARVPPDERAYLRAGVGSRLEAARRAAGLSRLALARRVGCSAG LVRHLERGTCRPREAAVRWLAYALEPDDPAPLREALLQAAGDSLRPDTSGTARAWTRRCEHAFLAGHWPVPSDVAQAIAA HQAAAAANREALAILDRPGAMRSVRALDQASALLDRALVLAEQAGPPVTVIVGRHRRTYHGI >Mature_221_residues SSVHPRSVHPEVVHTDMPQPAGERSLSRARPRDTAPWARVPPDERAYLRAGVGSRLEAARRAAGLSRLALARRVGCSAGL VRHLERGTCRPREAAVRWLAYALEPDDPAPLREALLQAAGDSLRPDTSGTARAWTRRCEHAFLAGHWPVPSDVAQAIAAH QAAAAANREALAILDRPGAMRSVRALDQASALLDRALVLAEQAGPPVTVIVGRHRRTYHGI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23977; Mature: 23845
Theoretical pI: Translated: 11.53; Mature: 11.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVHPRSVHPEVVHTDMPQPAGERSLSRARPRDTAPWARVPPDERAYLRAGVGSRLEAA CCCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH RRAAGLSRLALARRVGCSAGLVRHLERGTCRPREAAVRWLAYALEPDDPAPLREALLQAA HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHC GDSLRPDTSGTARAWTRRCEHAFLAGHWPVPSDVAQAIAAHQAAAAANREALAILDRPGA CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH MRSVRALDQASALLDRALVLAEQAGPPVTVIVGRHRRTYHGI HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCC >Mature Secondary Structure SSVHPRSVHPEVVHTDMPQPAGERSLSRARPRDTAPWARVPPDERAYLRAGVGSRLEAA CCCCCCCCCCHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHH RRAAGLSRLALARRVGCSAGLVRHLERGTCRPREAAVRWLAYALEPDDPAPLREALLQAA HHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHC GDSLRPDTSGTARAWTRRCEHAFLAGHWPVPSDVAQAIAAHQAAAAANREALAILDRPGA CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH MRSVRALDQASALLDRALVLAEQAGPPVTVIVGRHRRTYHGI HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA