| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is 158318015
Identifier: 158318015
GI number: 158318015
Start: 7621732
End: 7623345
Strand: Direct
Name: 158318015
Synonym: Franean1_6275
Alternate gene names: NA
Gene position: 7621732-7623345 (Clockwise)
Preceding gene: 158318014
Following gene: 158318016
Centisome position: 84.86
GC content: 71.38
Gene sequence:
>1614_bases GTGTCGGTCGCGATGGACTACGGGCCGCCGAGCGTCGAGAAGCCGCTCGGCGCGCTGCCCGTCGTGCGTGACTACCTGGC CCGTCTCGATGTCGCGGGCACGATCGATCGACTCGCCCCGATGCGTGACAAGGTCAACCGGGCCACCCACGGTGACGTGA TCGCCGCGCTGGTCGCGAACCGGCTGACCTCGCCGACCCCGCTGCTGCACGTCGAGCGGTGGGCACGCCAGTGGGCGGTC GAGGAGATGTTCGGTATCGCGCCGGACGTGTTGAACGACGACCGGGTCGGTCGGGCGCTTGACGCGCTCGCCCCGGTCTG TGAGGCCGTGGTCGGTTCGGTCGGTGCCGCGGCGATCGCCGCGTTCGGCCTCGACGTCTCCCGTATCCACTGGGACATGA CGTCGATCTCGCTGCACGGCGCCTACCCCGAGGTCGACGAGGACTACACGACCCCGAGATACGGCCATCCCAAGGACCGC CGGCCCGACCTCAAACAGGTCCAGACCGGGCTCGCGGTCACCGGTGACGGCGGGATCCCGCTGGTCCACCGCGCCTACGA CGGCGGCGCCGGCGAGGTCGCCCAGGTCACCGGCGCGATGCGCGCCCTGGCCACGATCGCCGGCGAACGGCGGTTCCTGC TGGTCGGAGACAGCAAGCTCGTTTCCTACGGAAACCTGACCGCGCTGATCGACGCCGGGGTGGAGTTCCTCGCTCCGGCA CCGAAACCCGTGGTGCCCGCTTCGACGCTCGCCGGGCTGGACTGGGCCAGCGCTGGCATCGTCGAGTACGTCGCCGACCG TGACCAGGCCAGGTTCGCTCACCAGCGGGCCTCCTACCGGGCCCGCGAAGGGGTGACAACGCTGCGCGGGCCACGCAAGA AGGACCCGGTCCTCACGGTGCGCACGGTCTACATCTGGTCGTCGGCCCGCGCGCACGCCGCGCGGGCTGCCCGGTCGAGC AAACTCGACCGGGCCCGCGACGACCTCGACCGGCTCTCCCACGCCGCCGGTTCCCACCACCTCTACCGCGACGTTGCCGC GGTGACCGCCCGCGTCGCGACGATCGCGGCGAAACGCCGCGTCGCCGGCTACCTCCTCACCGAGACGAGCACCGACCCGA ACACCGGGAAACCTGTCCTGACCTGGCATTTCGACCAGGCCGCGCTCGACGCCGAGGCCGCCACCGACGGCTGGTACGCC CTGCTGACCAACCTGCCTGACGACGTCGGCCCGGCCGAGGTCCTCGCCCGTTACAAGGGCCAGGAGGTCGTCGAACGGCG CTACGGCGCGTTCAAGGGCCCGCTCGCGGTCGCCCCGATGTTCCTGCACTCCAACCAGCGCATCCACGCGCTCATCCACG TCATCTGCCTGGCGCTGCTCGTCTTCTCGCTCATCGAGCGCCAGGCACGGCTCGGTGCTGGCCCGGACGGGAAGATCCCC GGCCTCTACGCCGGCCGGCCCGCCCGGCCCACCGGCGCGCTCGTCCTCGGCGCACTCAACACACTGCGCCTCATGCCCGC GCGTGACGGCCAGCCCGCTTACATCCCCCGCCCACCGCGCCTTCACCAACACCTCCTCGACATCCTCGGCACCGACCCGA CCCGACCACCTTGA
Upstream 100 bases:
>100_bases TTCCGCACGTGCGTGCGGTGAGACAGCTGCTTGATGTCTTGTTCGGATCACGTCGGGATGGTCGCGATCGGTAGTGACGG GCCTGGGACTGTTCCTGGCT
Downstream 100 bases:
>100_bases CCACCAACCAGGCAGGTCAAAGCATCGAATCCCCATGTGCGGAAGACCCGGCTAGTCAGGGTGTGGCACCCGAACGCCAC CGGCGCGAAGGCGCCCCCGT
Product: transposase
Products: NA
Alternate protein names: Transposase-Like Protein
Number of amino acids: Translated: 537; Mature: 536
Protein sequence:
>537_residues MSVAMDYGPPSVEKPLGALPVVRDYLARLDVAGTIDRLAPMRDKVNRATHGDVIAALVANRLTSPTPLLHVERWARQWAV EEMFGIAPDVLNDDRVGRALDALAPVCEAVVGSVGAAAIAAFGLDVSRIHWDMTSISLHGAYPEVDEDYTTPRYGHPKDR RPDLKQVQTGLAVTGDGGIPLVHRAYDGGAGEVAQVTGAMRALATIAGERRFLLVGDSKLVSYGNLTALIDAGVEFLAPA PKPVVPASTLAGLDWASAGIVEYVADRDQARFAHQRASYRAREGVTTLRGPRKKDPVLTVRTVYIWSSARAHAARAARSS KLDRARDDLDRLSHAAGSHHLYRDVAAVTARVATIAAKRRVAGYLLTETSTDPNTGKPVLTWHFDQAALDAEAATDGWYA LLTNLPDDVGPAEVLARYKGQEVVERRYGAFKGPLAVAPMFLHSNQRIHALIHVICLALLVFSLIERQARLGAGPDGKIP GLYAGRPARPTGALVLGALNTLRLMPARDGQPAYIPRPPRLHQHLLDILGTDPTRPP
Sequences:
>Translated_537_residues MSVAMDYGPPSVEKPLGALPVVRDYLARLDVAGTIDRLAPMRDKVNRATHGDVIAALVANRLTSPTPLLHVERWARQWAV EEMFGIAPDVLNDDRVGRALDALAPVCEAVVGSVGAAAIAAFGLDVSRIHWDMTSISLHGAYPEVDEDYTTPRYGHPKDR RPDLKQVQTGLAVTGDGGIPLVHRAYDGGAGEVAQVTGAMRALATIAGERRFLLVGDSKLVSYGNLTALIDAGVEFLAPA PKPVVPASTLAGLDWASAGIVEYVADRDQARFAHQRASYRAREGVTTLRGPRKKDPVLTVRTVYIWSSARAHAARAARSS KLDRARDDLDRLSHAAGSHHLYRDVAAVTARVATIAAKRRVAGYLLTETSTDPNTGKPVLTWHFDQAALDAEAATDGWYA LLTNLPDDVGPAEVLARYKGQEVVERRYGAFKGPLAVAPMFLHSNQRIHALIHVICLALLVFSLIERQARLGAGPDGKIP GLYAGRPARPTGALVLGALNTLRLMPARDGQPAYIPRPPRLHQHLLDILGTDPTRPP >Mature_536_residues SVAMDYGPPSVEKPLGALPVVRDYLARLDVAGTIDRLAPMRDKVNRATHGDVIAALVANRLTSPTPLLHVERWARQWAVE EMFGIAPDVLNDDRVGRALDALAPVCEAVVGSVGAAAIAAFGLDVSRIHWDMTSISLHGAYPEVDEDYTTPRYGHPKDRR PDLKQVQTGLAVTGDGGIPLVHRAYDGGAGEVAQVTGAMRALATIAGERRFLLVGDSKLVSYGNLTALIDAGVEFLAPAP KPVVPASTLAGLDWASAGIVEYVADRDQARFAHQRASYRAREGVTTLRGPRKKDPVLTVRTVYIWSSARAHAARAARSSK LDRARDDLDRLSHAAGSHHLYRDVAAVTARVATIAAKRRVAGYLLTETSTDPNTGKPVLTWHFDQAALDAEAATDGWYAL LTNLPDDVGPAEVLARYKGQEVVERRYGAFKGPLAVAPMFLHSNQRIHALIHVICLALLVFSLIERQARLGAGPDGKIPG LYAGRPARPTGALVLGALNTLRLMPARDGQPAYIPRPPRLHQHLLDILGTDPTRPP
Specific function: Unknown
COG id: COG5421
COG function: function code L; Transposase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57840; Mature: 57709
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVAMDYGPPSVEKPLGALPVVRDYLARLDVAGTIDRLAPMRDKVNRATHGDVIAALVAN CCEECCCCCCCHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RLTSPTPLLHVERWARQWAVEEMFGIAPDVLNDDRVGRALDALAPVCEAVVGSVGAAAIA HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFGLDVSRIHWDMTSISLHGAYPEVDEDYTTPRYGHPKDRRPDLKQVQTGLAVTGDGGIP HHCCCHHHEEEEHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCC LVHRAYDGGAGEVAQVTGAMRALATIAGERRFLLVGDSKLVSYGNLTALIDAGVEFLAPA EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCHHHHHHCCHHHHCCC PKPVVPASTLAGLDWASAGIVEYVADRDQARFAHQRASYRAREGVTTLRGPRKKDPVLTV CCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEE RTVYIWSSARAHAARAARSSKLDRARDDLDRLSHAAGSHHLYRDVAAVTARVATIAAKRR EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VAGYLLTETSTDPNTGKPVLTWHFDQAALDAEAATDGWYALLTNLPDDVGPAEVLARYKG HHEEEEEECCCCCCCCCCEEEEECCHHHHCCHHCCCCHHHHHHCCCCCCCHHHHHHHHCC QEVVERRYGAFKGPLAVAPMFLHSNQRIHALIHVICLALLVFSLIERQARLGAGPDGKIP HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GLYAGRPARPTGALVLGALNTLRLMPARDGQPAYIPRPPRLHQHLLDILGTDPTRPP CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SVAMDYGPPSVEKPLGALPVVRDYLARLDVAGTIDRLAPMRDKVNRATHGDVIAALVAN CEECCCCCCCHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH RLTSPTPLLHVERWARQWAVEEMFGIAPDVLNDDRVGRALDALAPVCEAVVGSVGAAAIA HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH AFGLDVSRIHWDMTSISLHGAYPEVDEDYTTPRYGHPKDRRPDLKQVQTGLAVTGDGGIP HHCCCHHHEEEEHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCCC LVHRAYDGGAGEVAQVTGAMRALATIAGERRFLLVGDSKLVSYGNLTALIDAGVEFLAPA EEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCEECCCCHHHHHHCCHHHHCCC PKPVVPASTLAGLDWASAGIVEYVADRDQARFAHQRASYRAREGVTTLRGPRKKDPVLTV CCCCCCHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEE RTVYIWSSARAHAARAARSSKLDRARDDLDRLSHAAGSHHLYRDVAAVTARVATIAAKRR EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH VAGYLLTETSTDPNTGKPVLTWHFDQAALDAEAATDGWYALLTNLPDDVGPAEVLARYKG HHEEEEEECCCCCCCCCCEEEEECCHHHHCCHHCCCCHHHHHHCCCCCCCHHHHHHHHCC QEVVERRYGAFKGPLAVAPMFLHSNQRIHALIHVICLALLVFSLIERQARLGAGPDGKIP HHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC GLYAGRPARPTGALVLGALNTLRLMPARDGQPAYIPRPPRLHQHLLDILGTDPTRPP CCCCCCCCCCCHHHHHHHHHHHEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA