| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pstS1 [H]
Identifier: 158317988
GI number: 158317988
Start: 7585258
End: 7586790
Strand: Reverse
Name: pstS1 [H]
Synonym: Franean1_6248
Alternate gene names: 158317988
Gene position: 7586790-7585258 (Counterclockwise)
Preceding gene: 158317990
Following gene: 158317985
Centisome position: 84.47
GC content: 66.73
Gene sequence:
>1533_bases GTGAGTTGGCTGAGCGCCGAGAATGCCGTGGCCGTGCTTACCGCGGCGCTCGGCATAGTGGCGTCCTTCGCGGTGGTCTG GTACGAGCGCCGGGTGCCGCGCCGCAGGCGCATTGGCTACCGCGTGCAGATGGACATGCCCATCGGCGGTGACAACCGTG ACGGGCAGGGCCAGGAAAACATACGGCTGGGCTTGTTCAACGATCTCCCCGACATGTCGGACGCCACCCTCGTCCTGCTG CGGGTCGAGAATGACGGCGCGCAGAGCGTCGCCGGCAACGACTACACCGGCGGCGACCTGCATGGTCTCACCGCCGTCTT CACGGATCGCATCGTCAGGGGTGTGACCGTCACCCAGCCCAACGCCGACCATCTCATGGAGCACTTCGCGCCTTCGAGGG GGATGCGGCACAGCGGCAACACGATCTACCTGCCTCGTGTCCCGCTCGACAGGGGTGAGCACTACAAGCTTCTGGTGCTC CTGACCGGCGGTAGCGTCGGCTGCGCCGTCCGCGTTGCCGGCGGGATCCAGGAAGGGGCGGTGAAGCCCAACCGGAGCAC GACAGTCGATGACAAGCCGCCCCTGTTCAGCCGGCCCGCTCGCCTGATCACCATTGTGCTCACCCTCTGCGTCATGGTGC TGGCGAGCATCATCGTCGTGGGCGACGGCCCACCTCCGCCCATCGGCTGCGCCACGGGGCGGCTGACCGTCAACGGGTCC ACGGCCTTCGCGCCGGTGGTGCAGGAAATCGCCAGCAGATACGAGTCGGACTGCCCCGACTCGGACATCACCGTGGAGGC GCGCGGCAGCAACGAAGGGGCGCTGCGGCTGGTGGAGGCGGGCGAGTCCGAAAAGGGATCCCCGGCCATGATCGTCATCC ATGACGGTGCCCGTTCGCAGCTCGACGCGCGGCTTCAGGGGGAGCGGGTGGCCATTTCCGCCTTCGCCGTCGTGGTGAAC GAAAAAGTGTCGGTCAGGAGCCTGACGATCGAGCAGATACGCCGCATCTACCGGGGTGATGTCGTCAACTGGAACCAGGT CGGCGGCCCCGATCTCCCGATCCTGCTGGTGAGCCGTGACGCCAACTCCGGTACCCGTGACCTGTTCCGGCGCCGCATCC TCGCCGGCATGGGCGAACCCGCCTTCACCTCGCAGGACTGCGAGCACAAGAATTTCCCACAGGACAAGGTCATCCGCTGT GAGCTCGACAGCACCGAGCGGGTACTGAGAAACGTGGCGAGGCTGCCGGGTGCGGTCGGGTACGGCGAACTGCGTACCGC CGAGGCCGTCGAGGGCCTGCACACCGTGCGCATCGACGGGCAGGAACCGTCGATCGAGGCGATCGGGAAAAGTGCCTATC CCTTCGCGGAGGTCGAATACGCGTACACCTTCGGGCAGCCGCCCGCCGGCTCCCTCACCTTGAGCTTCCTCGACTACCTG ACGAGGGGCGGCGGGCAGAACGCCATCAAGGATCACGGTGACCTGCCGTGCTACAGCCCGGAAGGCTTCAGACGTTGCCA GGAGGGGTCCTGA
Upstream 100 bases:
>100_bases GCGACCGAGTAGACCGTGGCTCTCTCCGCCCGTGTCGAGGCCCATACGGTACTCAAATCGACACGTCGGGCCGGTGGGGC ATTCGGGGGCGAGTTGAATC
Downstream 100 bases:
>100_bases ACCTCCACCGGCGACGGTGGGCGGGATGCCGACCGGAGTGAGACCTGGCGGAGCCTGACCAGATCGTGATCCGCGCGGTC AGGACGGCAAGGATCTCCGC
Product: putative phosphate binding ABC transporter
Products: NA
Alternate protein names: PBP 1 [H]
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSWLSAENAVAVLTAALGIVASFAVVWYERRVPRRRRIGYRVQMDMPIGGDNRDGQGQENIRLGLFNDLPDMSDATLVLL RVENDGAQSVAGNDYTGGDLHGLTAVFTDRIVRGVTVTQPNADHLMEHFAPSRGMRHSGNTIYLPRVPLDRGEHYKLLVL LTGGSVGCAVRVAGGIQEGAVKPNRSTTVDDKPPLFSRPARLITIVLTLCVMVLASIIVVGDGPPPPIGCATGRLTVNGS TAFAPVVQEIASRYESDCPDSDITVEARGSNEGALRLVEAGESEKGSPAMIVIHDGARSQLDARLQGERVAISAFAVVVN EKVSVRSLTIEQIRRIYRGDVVNWNQVGGPDLPILLVSRDANSGTRDLFRRRILAGMGEPAFTSQDCEHKNFPQDKVIRC ELDSTERVLRNVARLPGAVGYGELRTAEAVEGLHTVRIDGQEPSIEAIGKSAYPFAEVEYAYTFGQPPAGSLTLSFLDYL TRGGGQNAIKDHGDLPCYSPEGFRRCQEGS
Sequences:
>Translated_510_residues MSWLSAENAVAVLTAALGIVASFAVVWYERRVPRRRRIGYRVQMDMPIGGDNRDGQGQENIRLGLFNDLPDMSDATLVLL RVENDGAQSVAGNDYTGGDLHGLTAVFTDRIVRGVTVTQPNADHLMEHFAPSRGMRHSGNTIYLPRVPLDRGEHYKLLVL LTGGSVGCAVRVAGGIQEGAVKPNRSTTVDDKPPLFSRPARLITIVLTLCVMVLASIIVVGDGPPPPIGCATGRLTVNGS TAFAPVVQEIASRYESDCPDSDITVEARGSNEGALRLVEAGESEKGSPAMIVIHDGARSQLDARLQGERVAISAFAVVVN EKVSVRSLTIEQIRRIYRGDVVNWNQVGGPDLPILLVSRDANSGTRDLFRRRILAGMGEPAFTSQDCEHKNFPQDKVIRC ELDSTERVLRNVARLPGAVGYGELRTAEAVEGLHTVRIDGQEPSIEAIGKSAYPFAEVEYAYTFGQPPAGSLTLSFLDYL TRGGGQNAIKDHGDLPCYSPEGFRRCQEGS >Mature_509_residues SWLSAENAVAVLTAALGIVASFAVVWYERRVPRRRRIGYRVQMDMPIGGDNRDGQGQENIRLGLFNDLPDMSDATLVLLR VENDGAQSVAGNDYTGGDLHGLTAVFTDRIVRGVTVTQPNADHLMEHFAPSRGMRHSGNTIYLPRVPLDRGEHYKLLVLL TGGSVGCAVRVAGGIQEGAVKPNRSTTVDDKPPLFSRPARLITIVLTLCVMVLASIIVVGDGPPPPIGCATGRLTVNGST AFAPVVQEIASRYESDCPDSDITVEARGSNEGALRLVEAGESEKGSPAMIVIHDGARSQLDARLQGERVAISAFAVVVNE KVSVRSLTIEQIRRIYRGDVVNWNQVGGPDLPILLVSRDANSGTRDLFRRRILAGMGEPAFTSQDCEHKNFPQDKVIRCE LDSTERVLRNVARLPGAVGYGELRTAEAVEGLHTVRIDGQEPSIEAIGKSAYPFAEVEYAYTFGQPPAGSLTLSFLDYLT RGGGQNAIKDHGDLPCYSPEGFRRCQEGS
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55129; Mature: 54998
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: PS01295 ISPD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSWLSAENAVAVLTAALGIVASFAVVWYERRVPRRRRIGYRVQMDMPIGGDNRDGQGQEN CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCCCCCC IRLGLFNDLPDMSDATLVLLRVENDGAQSVAGNDYTGGDLHGLTAVFTDRIVRGVTVTQP EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECC NADHLMEHFAPSRGMRHSGNTIYLPRVPLDRGEHYKLLVLLTGGSVGCAVRVAGGIQEGA CHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHCC VKPNRSTTVDDKPPLFSRPARLITIVLTLCVMVLASIIVVGDGPPPPIGCATGRLTVNGS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCC TAFAPVVQEIASRYESDCPDSDITVEARGSNEGALRLVEAGESEKGSPAMIVIHDGARSQ CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCHH LDARLQGERVAISAFAVVVNEKVSVRSLTIEQIRRIYRGDVVNWNQVGGPDLPILLVSRD HHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC ANSGTRDLFRRRILAGMGEPAFTSQDCEHKNFPQDKVIRCELDSTERVLRNVARLPGAVG CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCC YGELRTAEAVEGLHTVRIDGQEPSIEAIGKSAYPFAEVEYAYTFGQPPAGSLTLSFLDYL CCHHHHHHHHCCEEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH TRGGGQNAIKDHGDLPCYSPEGFRRCQEGS HCCCCCCCCCCCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure SWLSAENAVAVLTAALGIVASFAVVWYERRVPRRRRIGYRVQMDMPIGGDNRDGQGQEN CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCCCCCCCCC IRLGLFNDLPDMSDATLVLLRVENDGAQSVAGNDYTGGDLHGLTAVFTDRIVRGVTVTQP EEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECC NADHLMEHFAPSRGMRHSGNTIYLPRVPLDRGEHYKLLVLLTGGSVGCAVRVAGGIQEGA CHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHCC VKPNRSTTVDDKPPLFSRPARLITIVLTLCVMVLASIIVVGDGPPPPIGCATGRLTVNGS CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCEEEECCC TAFAPVVQEIASRYESDCPDSDITVEARGSNEGALRLVEAGESEKGSPAMIVIHDGARSQ CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCEEEEEECCCCHH LDARLQGERVAISAFAVVVNEKVSVRSLTIEQIRRIYRGDVVNWNQVGGPDLPILLVSRD HHHHHCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECC ANSGTRDLFRRRILAGMGEPAFTSQDCEHKNFPQDKVIRCELDSTERVLRNVARLPGAVG CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCC YGELRTAEAVEGLHTVRIDGQEPSIEAIGKSAYPFAEVEYAYTFGQPPAGSLTLSFLDYL CCHHHHHHHHCCEEEEEECCCCCCHHHCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHH TRGGGQNAIKDHGDLPCYSPEGFRRCQEGS HCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11463916 [H]