| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is manA [H]
Identifier: 158317605
GI number: 158317605
Start: 7109857
End: 7111146
Strand: Direct
Name: manA [H]
Synonym: Franean1_5861
Alternate gene names: 158317605
Gene position: 7109857-7111146 (Clockwise)
Preceding gene: 158317604
Following gene: 158317611
Centisome position: 79.16
GC content: 76.28
Gene sequence:
>1290_bases GTGACCATCGGGGAGACCACACCAGCCAACACCGGGACGTCCGTTCGGAGGTGGGACGCGCGGACCGGCCGACCGGCGGG CGCGCCACGCGGGGCACCACCGCCGCGTGCCCCGGTCCGCATCCTGGAGCTGCACGGCCGGGCACAGCGCTACGCCTGGG GCTCGCCGACCGCGATACCCGACCTCCTGGACGTCCCGTCCGACGGGGAGCCCGTCGCCGAGCTGTGGCTGGGCACCCAC CCCCAGGCCCCGGCCGAGGTCGTGGGCACCGGAACCTCAGGTCGGCGGCCGGCCGCCGACCTCGTCGGCGAGCTGCCCTT CCTGCTGAAGGTGCTCGCCGCCGACAAGGCCCTGTCGCTGCAGGTCCACCCGAACGTCGAGCAGGCACGCGCCGGCTTCG ACGCCGAGCAGGCCGCAGGGATCACTCCCGACGACCCGCGCCGCCGCTACCGGGACCGCAACCACAAGCCCGAGCTGATC GTGGCCCTGACGCCGTTCCGGGCCCTCGCCGGCATCCGGGCGCCCGGCGCCACCCTCGCGATCGCGCGCGGGCTCGGCCA TCCCGGTCTGATCGCCGCGTTCGCGCCCCTGGCGACCGATCCGGCCGGCGGCGCCACCCAGGTGCTGCGCAGCCTGCTGA CACTCCCCCCGCAGGCCGGCGAGGAGCTGGCCGCCGGGGTGGTCGCCGCCGCCGAGCGGGTCTCCCCCGACGCGGACGAG CAGTTGCGTCGCGCGGCCGAGCTCGTCCTGCTGCTCGCCGAGACCCACCCCGGGGACGTCGGCATCGCCGCGGCGCTGCT GCTCAACGACGTCACGCTGCGCCCCGGCGAGGGCCTGTTCCAGCCGGCGCGGCTGCTGCACGCCTACGTCCAGGGCGTCG GGATCGAGATCATGGCCACGTCGGACAACGTCCTGCGCGGCGGGCTCACCCCGAAGCACATCGACGTCGACGAGCTGCTG CGGATCCTCGACCCGCGCCCCACCAGCGCTCCGGTACTCACCCCGCGCCCGCTGGCGACCGGCCCCGGCGGCCAGCTGCG GGCCTGGGATGTGCCGGTGGACGACTTCGTCCTGCGCGAGGCTGTCTGCGCCGGTGGCAGCGTGGCGGTGCCCGACACGT CCGTGCTGCTGGCGGTGGAGGGCAGCGTCGAGGTCGCGGGCACGGACCTGGCGGGCTCGCCGCTGGCGCCGATGACCCTG CGCCGCGGCGGCTCGGCCCTGGTGACCGGCCCGGCAGCCCTGACACTCACCGGCACGGGACGGGTCTTCGCCGCGGGCTC CCGCGTCTGA
Upstream 100 bases:
>100_bases GGCCATGGCTGGGGCGACGACGAGGAGTAGGGCCCACCACGAGAGCCACCCGACGGGCTCAGAGCCGCTCACGACCGCCG ACGCGGGGACGGAGACACGT
Downstream 100 bases:
>100_bases GCCCGGCCAGACAGAGAGCACACGCAGACCACTACACCTTCGTTTGGCCTGGGCGGGTGCCGCTCACCAGGCGACGCGCG GATCGGCCAGCGACGCCGGA
Product: mannose-6-phosphate isomerase, class I
Products: NA
Alternate protein names: Phosphohexomutase; Phosphomannose isomerase; PMI [H]
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MTIGETTPANTGTSVRRWDARTGRPAGAPRGAPPPRAPVRILELHGRAQRYAWGSPTAIPDLLDVPSDGEPVAELWLGTH PQAPAEVVGTGTSGRRPAADLVGELPFLLKVLAADKALSLQVHPNVEQARAGFDAEQAAGITPDDPRRRYRDRNHKPELI VALTPFRALAGIRAPGATLAIARGLGHPGLIAAFAPLATDPAGGATQVLRSLLTLPPQAGEELAAGVVAAAERVSPDADE QLRRAAELVLLLAETHPGDVGIAAALLLNDVTLRPGEGLFQPARLLHAYVQGVGIEIMATSDNVLRGGLTPKHIDVDELL RILDPRPTSAPVLTPRPLATGPGGQLRAWDVPVDDFVLREAVCAGGSVAVPDTSVLLAVEGSVEVAGTDLAGSPLAPMTL RRGGSALVTGPAALTLTGTGRVFAAGSRV
Sequences:
>Translated_429_residues MTIGETTPANTGTSVRRWDARTGRPAGAPRGAPPPRAPVRILELHGRAQRYAWGSPTAIPDLLDVPSDGEPVAELWLGTH PQAPAEVVGTGTSGRRPAADLVGELPFLLKVLAADKALSLQVHPNVEQARAGFDAEQAAGITPDDPRRRYRDRNHKPELI VALTPFRALAGIRAPGATLAIARGLGHPGLIAAFAPLATDPAGGATQVLRSLLTLPPQAGEELAAGVVAAAERVSPDADE QLRRAAELVLLLAETHPGDVGIAAALLLNDVTLRPGEGLFQPARLLHAYVQGVGIEIMATSDNVLRGGLTPKHIDVDELL RILDPRPTSAPVLTPRPLATGPGGQLRAWDVPVDDFVLREAVCAGGSVAVPDTSVLLAVEGSVEVAGTDLAGSPLAPMTL RRGGSALVTGPAALTLTGTGRVFAAGSRV >Mature_428_residues TIGETTPANTGTSVRRWDARTGRPAGAPRGAPPPRAPVRILELHGRAQRYAWGSPTAIPDLLDVPSDGEPVAELWLGTHP QAPAEVVGTGTSGRRPAADLVGELPFLLKVLAADKALSLQVHPNVEQARAGFDAEQAAGITPDDPRRRYRDRNHKPELIV ALTPFRALAGIRAPGATLAIARGLGHPGLIAAFAPLATDPAGGATQVLRSLLTLPPQAGEELAAGVVAAAERVSPDADEQ LRRAAELVLLLAETHPGDVGIAAALLLNDVTLRPGEGLFQPARLLHAYVQGVGIEIMATSDNVLRGGLTPKHIDVDELLR ILDPRPTSAPVLTPRPLATGPGGQLRAWDVPVDDFVLREAVCAGGSVAVPDTSVLLAVEGSVEVAGTDLAGSPLAPMTLR RGGSALVTGPAALTLTGTGRVFAAGSRV
Specific function: Involved in the conversion of glucose to GDP-L-fucose, which can be converted to L-fucose, a capsular polysaccharide [H]
COG id: COG1482
COG function: function code G; Phosphomannose isomerase
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the mannose-6-phosphate isomerase type 1 family [H]
Homologues:
Organism=Homo sapiens, GI4505235, Length=419, Percent_Identity=30.3102625298329, Blast_Score=170, Evalue=2e-42, Organism=Escherichia coli, GI1787899, Length=402, Percent_Identity=36.5671641791045, Blast_Score=204, Evalue=6e-54, Organism=Caenorhabditis elegans, GI71997620, Length=404, Percent_Identity=30.4455445544554, Blast_Score=147, Evalue=1e-35, Organism=Caenorhabditis elegans, GI17557650, Length=332, Percent_Identity=29.8192771084337, Blast_Score=134, Evalue=9e-32, Organism=Saccharomyces cerevisiae, GI6320839, Length=367, Percent_Identity=28.6103542234332, Blast_Score=118, Evalue=2e-27, Organism=Drosophila melanogaster, GI21356061, Length=335, Percent_Identity=31.9402985074627, Blast_Score=142, Evalue=5e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011051 - InterPro: IPR001250 - InterPro: IPR016305 - InterPro: IPR018050 - InterPro: IPR014710 [H]
Pfam domain/function: PF01238 PMI_typeI [H]
EC number: =5.3.1.8 [H]
Molecular weight: Translated: 44350; Mature: 44219
Theoretical pI: Translated: 6.32; Mature: 6.32
Prosite motif: PS00965 PMI_I_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIGETTPANTGTSVRRWDARTGRPAGAPRGAPPPRAPVRILELHGRAQRYAWGSPTAIP CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCC DLLDVPSDGEPVAELWLGTHPQAPAEVVGTGTSGRRPAADLVGELPFLLKVLAADKALSL HHHCCCCCCCHHHHHHCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE QVHPNVEQARAGFDAEQAAGITPDDPRRRYRDRNHKPELIVALTPFRALAGIRAPGATLA EECCCHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCHHHH IARGLGHPGLIAAFAPLATDPAGGATQVLRSLLTLPPQAGEELAAGVVAAAERVSPDADE HHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHH QLRRAAELVLLLAETHPGDVGIAAALLLNDVTLRPGEGLFQPARLLHAYVQGVGIEIMAT HHHHHHHHEEEEECCCCCCHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCEEEEEC SDNVLRGGLTPKHIDVDELLRILDPRPTSAPVLTPRPLATGPGGQLRAWDVPVDDFVLRE CCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHH AVCAGGSVAVPDTSVLLAVEGSVEVAGTDLAGSPLAPMTLRRGGSALVTGPAALTLTGTG HHHCCCCEECCCCEEEEEECCCEEEECCCCCCCCCCCHHHHCCCCEEEECCEEEEEECCC RVFAAGSRV EEEECCCCC >Mature Secondary Structure TIGETTPANTGTSVRRWDARTGRPAGAPRGAPPPRAPVRILELHGRAQRYAWGSPTAIP CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHCCCCCCCCCC DLLDVPSDGEPVAELWLGTHPQAPAEVVGTGTSGRRPAADLVGELPFLLKVLAADKALSL HHHCCCCCCCHHHHHHCCCCCCCCHHEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE QVHPNVEQARAGFDAEQAAGITPDDPRRRYRDRNHKPELIVALTPFRALAGIRAPGATLA EECCCHHHHHCCCCHHHHCCCCCCCHHHHHHCCCCCCCEEEEECCHHHHHCCCCCCHHHH IARGLGHPGLIAAFAPLATDPAGGATQVLRSLLTLPPQAGEELAAGVVAAAERVSPDADE HHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHH QLRRAAELVLLLAETHPGDVGIAAALLLNDVTLRPGEGLFQPARLLHAYVQGVGIEIMAT HHHHHHHHEEEEECCCCCCHHHHHHHHHHCCEECCCCCCHHHHHHHHHHHHCCCEEEEEC SDNVLRGGLTPKHIDVDELLRILDPRPTSAPVLTPRPLATGPGGQLRAWDVPVDDFVLRE CCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHH AVCAGGSVAVPDTSVLLAVEGSVEVAGTDLAGSPLAPMTLRRGGSALVTGPAALTLTGTG HHHCCCCEECCCCEEEEEECCCEEEECCCCCCCCCCCHHHHCCCCEEEECCEEEEEECCC RVFAAGSRV EEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1879695; 11677609 [H]