| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is lon [H]
Identifier: 158317261
GI number: 158317261
Start: 6672688
End: 6675195
Strand: Direct
Name: lon [H]
Synonym: Franean1_5508
Alternate gene names: 158317261
Gene position: 6672688-6675195 (Clockwise)
Preceding gene: 158317255
Following gene: 158317262
Centisome position: 74.29
GC content: 74.8
Gene sequence:
>2508_bases ATGTCACACACCAGGCTCCTCCCGCTGCTGCCGCTGGACGACGCGGTCGTCCTGCCCGGCATGGTGGTTCCGCTCGACCT GTCGGACGCCGGGACCCGCGCCGCCGTGGACGCGGCCCGCGGCGGCAGGCCCGACTCCACACCCGACGCCAGGGCGCCGG GCATCTCCAGCCGCTCCTTCCAGCGCACCGCCGAGATCCTGCTCGTCCCCCGGGTGGACGGCGACCTCGCCGACATGGGC GTCCTCGCCGTCGTCGACCAGATCGGCCGGCTGCCGAACGGCGGGACGGCCGCGCTCGTGCGGGCCGTGTCCCGCGCCCG GGTCGGCACCGCCCCCACGCCGCCCGGCGCCGCCGACGCCGGTGTCGTGTGGGCGGAGGCGACCCCTGTCGAGCCGGTCC TCCCGGCCGGCTTCACCGGCACGATCAGCGCGACGGCGACCGCGGGCGCGCCGGGCGCCACCGGCGACCCCGACGGCCCG ACCGCCCGGCTGGTCGAGCTCGCCCGCGAGTACCGCACGCTGGTGACCGGGGTGCTGCGCGCCCGCGGGGTCGGCCAGGT CGCCGACACCGTCGAGGCGATCGAGAACCCCGACACGCTGGCCGACACCGCCGGCTACTCGTCCTACCTGTCGACCGCGC AGAAGCTGGAGCTGCTGCGCACCGTCGACGTGACCGCCCGGCTGGAGCTGCTCGTCCCGTGGACTCGGGAGCACGCCGCC GAGGTCGACGTGGCCGAGACCATCCGGCGCGACGTCCAGGAGGGCGTCGACCGCCAGCAGCGGGAGTTCCTGCTGCGCCG TCAGCTGGAGGCCGTCCGCAAGGAACTGGCCGAGCTGGACGGGTCACCCGCGTCCTCCGAACAGGAGGACTACCGGGCCC GGGTCGAGGCCGCCGACCTGCCGGAGAAGGTCCGCGCCGCGGCGCTCAAGGAGGTCGACAAGCTGGAGCGGACGGCCGAG TCCTCCCCCGAGGTCGGTTGGATCCGCACCTGGCTGGACACCGTCCTGGAGCTGCCGTGGAACGAGCACGCCGAGGACAC CTACGACATCGCCTCGGCGCGGGCCGTGCTGGACGCCGACCACGCCGGGCTCAGCGACGTCAAGGACCGGATCGTCGAGT ACCTGGCGGTCCGCCGCCGGCGGGCCGACGCCGGGCTCGGGGTCGTCGGTGGGCGCCGCAGCGGCGCGGTGCTCGCGCTT GCCGGGCCGCCCGGGGTCGGCAAGACCTCGCTGGGCGAGTCCGTGGCCCGCGCCATGGGCCGCCGGTTCGCCCGGGTGGC GCTCGGCGGCGTCCGCGACGAGGCGGAGATCCGCGGCCACCGGCGCACCTACGTCGGTGCGCAGCCCGGTCGCATCGTGC GGGCGATCCGCGAGGCCGGCTCGATGAACCCGGTGATCCTGCTCGACGAGGTCGACAAGGTCGGCTCCGACTACCGCGGG GACCCGACGGCGGCGCTGCTCGAGGTGCTGGACCCGGCGCAGAACCACACCTTCCGCGACCACTACCTGGAGGTCGAGCT CGACCTGTCGGACGTGTTGTTCCTGGCCACCGCGAACGTGCTGGAGTCCATCCCGGCGCCGCTGCTGGACCGGATGGAGC TGATCCTGCTCGACGGCTACACCGAGGAGGAGAAGGTCACCATCGCCCGCGACCACCTGCTCCCGCGCCAGCTCGAGCGG GCCGGGCTGACCCCCGACGACGTCACCGTGGACGACGCGGCGCTGCGGCTGCTGGCCGGCGAGTACACCCGCGAGGCCGG CGTGCGTGACCTGGAGCGGGCGACCGCCCGGGTGCTGCGCAAGGTCGTCGCGAAGGTCGCACTGGACGAGACCGCCCTGC CGGTCACGATCGGCGCCGGCGATCTGGCCGGATACCTCGGACGGCCGCGGCACACCCCGGAGTCGGCGGAGCGCACCGCG CTGCCGGGGGTGGCGACCGGGCTCGCGGTCACAGGGGCCGGCGGGGACGTCCTGTTCGTCGAGGCGTCACTGGCCGACCC GGAGACCGGGGCCAGCGGAGTGACGCTGACCGGGCAGCTCGGCGACGTCATGAAGGAGTCGGCGCAGATCGCGCTGTCCT ACCTGCGCTCGCGCGGGGTGGAGCTCGAACTGCCGGTCGGCGACCTGCGTGACCGCGGGGTGCACATCCACGTCCCGGCG GGCGCGGTGCCCAAGGACGGGCCGAGCGCCGGGGTCACGATGACCACCGCGCTGGCATCCCTGCTCTCCGGGCGCCCGGT GCGCGCGGACGTGGCGATGACCGGCGAGGTCTCGCTGACCGGTCGGGTGCTACCCATAGGTGGGGTCAAGCAGAAGTTGC TCGCCGCGCACCGCGCCGGCATCGCAACGGTGCTCCTGCCGGCGCGCAACGGCCCGGACCTTGACGACGTCCCGGCAGCG GTCCGCGAGGCGCTGACCGTGCACCTGGTTGCGGACGTCCGCGAAGTGCTTGAGCTGGCGCTGGAACCGGCCTTCGACAC GACGCACACCCACGCCGTGGCGGCCTGA
Upstream 100 bases:
>100_bases GGCGATCAGGTTCGGGAACAACGATCCGCTCCGATGCCTTGAGCACGACAGGCTCAATGAGAGTGGGCCCAAGCCGCTCG ACACGAGGGATGAAGGCCGC
Downstream 100 bases:
>100_bases GATTGTCCGTTGGTAGCTAGTTGGGTGCCGCCGCCGCCTCTCACAACGGCGGCGGCGGCACCTACGTGCCGACGCGACGC GCGGGTCCGGAACGCACGCG
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 835; Mature: 834
Protein sequence:
>835_residues MSHTRLLPLLPLDDAVVLPGMVVPLDLSDAGTRAAVDAARGGRPDSTPDARAPGISSRSFQRTAEILLVPRVDGDLADMG VLAVVDQIGRLPNGGTAALVRAVSRARVGTAPTPPGAADAGVVWAEATPVEPVLPAGFTGTISATATAGAPGATGDPDGP TARLVELAREYRTLVTGVLRARGVGQVADTVEAIENPDTLADTAGYSSYLSTAQKLELLRTVDVTARLELLVPWTREHAA EVDVAETIRRDVQEGVDRQQREFLLRRQLEAVRKELAELDGSPASSEQEDYRARVEAADLPEKVRAAALKEVDKLERTAE SSPEVGWIRTWLDTVLELPWNEHAEDTYDIASARAVLDADHAGLSDVKDRIVEYLAVRRRRADAGLGVVGGRRSGAVLAL AGPPGVGKTSLGESVARAMGRRFARVALGGVRDEAEIRGHRRTYVGAQPGRIVRAIREAGSMNPVILLDEVDKVGSDYRG DPTAALLEVLDPAQNHTFRDHYLEVELDLSDVLFLATANVLESIPAPLLDRMELILLDGYTEEEKVTIARDHLLPRQLER AGLTPDDVTVDDAALRLLAGEYTREAGVRDLERATARVLRKVVAKVALDETALPVTIGAGDLAGYLGRPRHTPESAERTA LPGVATGLAVTGAGGDVLFVEASLADPETGASGVTLTGQLGDVMKESAQIALSYLRSRGVELELPVGDLRDRGVHIHVPA GAVPKDGPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAGIATVLLPARNGPDLDDVPAA VREALTVHLVADVREVLELALEPAFDTTHTHAVAA
Sequences:
>Translated_835_residues MSHTRLLPLLPLDDAVVLPGMVVPLDLSDAGTRAAVDAARGGRPDSTPDARAPGISSRSFQRTAEILLVPRVDGDLADMG VLAVVDQIGRLPNGGTAALVRAVSRARVGTAPTPPGAADAGVVWAEATPVEPVLPAGFTGTISATATAGAPGATGDPDGP TARLVELAREYRTLVTGVLRARGVGQVADTVEAIENPDTLADTAGYSSYLSTAQKLELLRTVDVTARLELLVPWTREHAA EVDVAETIRRDVQEGVDRQQREFLLRRQLEAVRKELAELDGSPASSEQEDYRARVEAADLPEKVRAAALKEVDKLERTAE SSPEVGWIRTWLDTVLELPWNEHAEDTYDIASARAVLDADHAGLSDVKDRIVEYLAVRRRRADAGLGVVGGRRSGAVLAL AGPPGVGKTSLGESVARAMGRRFARVALGGVRDEAEIRGHRRTYVGAQPGRIVRAIREAGSMNPVILLDEVDKVGSDYRG DPTAALLEVLDPAQNHTFRDHYLEVELDLSDVLFLATANVLESIPAPLLDRMELILLDGYTEEEKVTIARDHLLPRQLER AGLTPDDVTVDDAALRLLAGEYTREAGVRDLERATARVLRKVVAKVALDETALPVTIGAGDLAGYLGRPRHTPESAERTA LPGVATGLAVTGAGGDVLFVEASLADPETGASGVTLTGQLGDVMKESAQIALSYLRSRGVELELPVGDLRDRGVHIHVPA GAVPKDGPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAGIATVLLPARNGPDLDDVPAA VREALTVHLVADVREVLELALEPAFDTTHTHAVAA >Mature_834_residues SHTRLLPLLPLDDAVVLPGMVVPLDLSDAGTRAAVDAARGGRPDSTPDARAPGISSRSFQRTAEILLVPRVDGDLADMGV LAVVDQIGRLPNGGTAALVRAVSRARVGTAPTPPGAADAGVVWAEATPVEPVLPAGFTGTISATATAGAPGATGDPDGPT ARLVELAREYRTLVTGVLRARGVGQVADTVEAIENPDTLADTAGYSSYLSTAQKLELLRTVDVTARLELLVPWTREHAAE VDVAETIRRDVQEGVDRQQREFLLRRQLEAVRKELAELDGSPASSEQEDYRARVEAADLPEKVRAAALKEVDKLERTAES SPEVGWIRTWLDTVLELPWNEHAEDTYDIASARAVLDADHAGLSDVKDRIVEYLAVRRRRADAGLGVVGGRRSGAVLALA GPPGVGKTSLGESVARAMGRRFARVALGGVRDEAEIRGHRRTYVGAQPGRIVRAIREAGSMNPVILLDEVDKVGSDYRGD PTAALLEVLDPAQNHTFRDHYLEVELDLSDVLFLATANVLESIPAPLLDRMELILLDGYTEEEKVTIARDHLLPRQLERA GLTPDDVTVDDAALRLLAGEYTREAGVRDLERATARVLRKVVAKVALDETALPVTIGAGDLAGYLGRPRHTPESAERTAL PGVATGLAVTGAGGDVLFVEASLADPETGASGVTLTGQLGDVMKESAQIALSYLRSRGVELELPVGDLRDRGVHIHVPAG AVPKDGPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAGIATVLLPARNGPDLDDVPAAV REALTVHLVADVREVLELALEPAFDTTHTHAVAA
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=661, Percent_Identity=43.267776096823, Blast_Score=519, Evalue=1e-147, Organism=Homo sapiens, GI21396489, Length=675, Percent_Identity=40.7407407407407, Blast_Score=501, Evalue=1e-141, Organism=Escherichia coli, GI1786643, Length=824, Percent_Identity=41.1407766990291, Blast_Score=590, Evalue=1e-169, Organism=Caenorhabditis elegans, GI17505831, Length=667, Percent_Identity=37.1814092953523, Blast_Score=443, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17556486, Length=634, Percent_Identity=38.01261829653, Blast_Score=419, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6319449, Length=673, Percent_Identity=38.3358098068351, Blast_Score=472, Evalue=1e-134, Organism=Drosophila melanogaster, GI221513036, Length=645, Percent_Identity=41.0852713178295, Blast_Score=506, Evalue=1e-143, Organism=Drosophila melanogaster, GI24666867, Length=645, Percent_Identity=41.0852713178295, Blast_Score=506, Evalue=1e-143,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88275; Mature: 88144
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS00630 IMP_2 ; PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHTRLLPLLPLDDAVVLPGMVVPLDLSDAGTRAAVDAARGGRPDSTPDARAPGISSRSF CCCCCEEEECCCCCCEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH QRTAEILLVPRVDGDLADMGVLAVVDQIGRLPNGGTAALVRAVSRARVGTAPTPPGAADA HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC GVVWAEATPVEPVLPAGFTGTISATATAGAPGATGDPDGPTARLVELAREYRTLVTGVLR CEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARGVGQVADTVEAIENPDTLADTAGYSSYLSTAQKLELLRTVDVTARLELLVPWTREHAA HCCCCHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHH EVDVAETIRRDVQEGVDRQQREFLLRRQLEAVRKELAELDGSPASSEQEDYRARVEAADL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC PEKVRAAALKEVDKLERTAESSPEVGWIRTWLDTVLELPWNEHAEDTYDIASARAVLDAD HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC HAGLSDVKDRIVEYLAVRRRRADAGLGVVGGRRSGAVLALAGPPGVGKTSLGESVARAMG CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHH RRFARVALGGVRDEAEIRGHRRTYVGAQPGRIVRAIREAGSMNPVILLDEVDKVGSDYRG HHHHHHHHCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCC DPTAALLEVLDPAQNHTFRDHYLEVELDLSDVLFLATANVLESIPAPLLDRMELILLDGY CHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHCCEEEEECCC TEEEKVTIARDHLLPRQLERAGLTPDDVTVDDAALRLLAGEYTREAGVRDLERATARVLR CCCCCEEHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH KVVAKVALDETALPVTIGAGDLAGYLGRPRHTPESAERTALPGVATGLAVTGAGGDVLFV HHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHCCCCHHHCEEEECCCCCEEEE EASLADPETGASGVTLTGQLGDVMKESAQIALSYLRSRGVELELPVGDLRDRGVHIHVPA EEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCCEEEEECC GAVPKDGPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAG CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEEECCEEEECCCHHHHHHHHHHCC IATVLLPARNGPDLDDVPAAVREALTVHLVADVREVLELALEPAFDTTHTHAVAA CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC >Mature Secondary Structure SHTRLLPLLPLDDAVVLPGMVVPLDLSDAGTRAAVDAARGGRPDSTPDARAPGISSRSF CCCCEEEECCCCCCEECCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHH QRTAEILLVPRVDGDLADMGVLAVVDQIGRLPNGGTAALVRAVSRARVGTAPTPPGAADA HCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC GVVWAEATPVEPVLPAGFTGTISATATAGAPGATGDPDGPTARLVELAREYRTLVTGVLR CEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH ARGVGQVADTVEAIENPDTLADTAGYSSYLSTAQKLELLRTVDVTARLELLVPWTREHAA HCCCCHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEEECCHHHHHH EVDVAETIRRDVQEGVDRQQREFLLRRQLEAVRKELAELDGSPASSEQEDYRARVEAADL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC PEKVRAAALKEVDKLERTAESSPEVGWIRTWLDTVLELPWNEHAEDTYDIASARAVLDAD HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC HAGLSDVKDRIVEYLAVRRRRADAGLGVVGGRRSGAVLALAGPPGVGKTSLGESVARAMG CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHH RRFARVALGGVRDEAEIRGHRRTYVGAQPGRIVRAIREAGSMNPVILLDEVDKVGSDYRG HHHHHHHHCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCEEEEECHHHCCCCCCC DPTAALLEVLDPAQNHTFRDHYLEVELDLSDVLFLATANVLESIPAPLLDRMELILLDGY CHHHHHHHHHCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCHHHHHCCEEEEECCC TEEEKVTIARDHLLPRQLERAGLTPDDVTVDDAALRLLAGEYTREAGVRDLERATARVLR CCCCCEEHHHHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH KVVAKVALDETALPVTIGAGDLAGYLGRPRHTPESAERTALPGVATGLAVTGAGGDVLFV HHHHHHHHCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHCCCCHHHCEEEECCCCCEEEE EASLADPETGASGVTLTGQLGDVMKESAQIALSYLRSRGVELELPVGDLRDRGVHIHVPA EEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHCCEEEEECC GAVPKDGPSAGVTMTTALASLLSGRPVRADVAMTGEVSLTGRVLPIGGVKQKLLAAHRAG CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCEEECCEEEECCCHHHHHHHHHHCC IATVLLPARNGPDLDDVPAAVREALTVHLVADVREVLELALEPAFDTTHTHAVAA CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA