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The map label for this gene is xylR [H]

Identifier: 158316944

GI number: 158316944

Start: 6228943

End: 6230148

Strand: Reverse

Name: xylR [H]

Synonym: Franean1_5188

Alternate gene names: 158316944

Gene position: 6230148-6228943 (Counterclockwise)

Preceding gene: 158316945

Following gene: 158316943

Centisome position: 69.36

GC content: 74.79

Gene sequence:

>1206_bases
ATGACCGTTGACGGCCACGTGGCCGCGCCGCAAGGCTTTGTGTTCATGCCCCGAACGCCGCCCGGCTCCCAGTCGTCGCT
GCGCGCGGCCAACCGGGACCGGGTCCTGGGCGTGCTGCGGCGGGAGGGCAGCCTCGCCCAGGCGGAGATCGCGCGGCTGA
CCGGGCTGTCCCCGGCGACCGTCTCCAACATCGTCGGCGAGCTGCGCGAGAGCGGGGACGTCGACGTGCGCCCCGCGGTG
AGCGGCGGGCGGCGGGCGGTCCGGGTGTCGCTGTCGCGGCGGTCCGGAGTCGTGATCGGGCTCGACTTCGGCCACCGCCA
CCTGCGGGTCGCCATCGGCGACCTCGCGCACGAGGTGCTGGCCGAGGACGTCGTCGACATCGACGTCGATCACCAGGCCC
AGGAGGGCATCGCGACGGCCGGCCGGCTGGTCGACGACCTGCTCGGACGGCTCGCCGTCGACCGGGCGGACGTGGTCGGC
GTGGGCATGGGCCTGCCCGGCCCGATCGACGCGGTCACCGGCGCCGTCGGATCCTCGGCGATCCTGCCCGGATGGGTCGG
CGTGCCCGCCGCCGCGCAGATGTCGGAGCGGCTCGGGCTGCCCGTCCGGGTCGACAACGACGCCAACCTCGGTGCCCTCG
CCGAACTGCACTGGGGCGCCGGCCAGGGCGTCCGCGACCTCGCCTACCTCAAGGCCTCCACCGGCGTCGGCTCGGGCCTG
GTCATCGACGGGCGCGTCCACCGCGGCGGAGCGGGAACCGCGGGCGAGATCGGGCACACCACGCTGGACGAGAACGGCTC
GGTCTGCCGCTGCGGAAACCGCGGCTGCCTGGAGACGATCGTCGGAACGTCGGTGCTGCTCGAGTCGCTGCGCACGAGCC
ACGGGCCGGATCTCACCGTGCGCGGGATGATCGACCGCGCGGTCGCCGGTGACGCGGGATGCGCCCGCGTGGTCTCGGAC
GCCGGCCGGGCCATCGGGAACGCGGCCGCGAACCTGTGCAACCTGCTGAACCCCCAGGTGATCGTCGTGGGCGGCGACCT
CGCGGCGGCGGGGGAGACTCTGTTGGAACCGATGCGCCAGGTGGTGCACCGCTTCGCCGTTCCGGCGGCCGTCCCGACAA
TCGTGGCCGGCGTGCTCGGCGAGCGTGCGGAGGTCCTCGGCGCCCTCGCGCTGGTGCTGCGCGAGGGCGAGCCGATCCCG
CGCTGA

Upstream 100 bases:

>100_bases
CGCACGTGGAGTGCGTGGCGACCTTGGAGCCCGCGCCCGCGGGCGCGACCGGCTCCGCGGAGCCGGCCCGGCCAGGCACG
GGCAGCACGGCGCTACCGCG

Downstream 100 bases:

>100_bases
CCGGGCGCCATCCTGACCGGGCGCCAATCCTGACCGGCGCCGTGCTGACCCTTCCGGCCTGACGGGCGCGTCCGCGCAGG
CCCAGCTCCGGAGTACCAGC

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MTVDGHVAAPQGFVFMPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVDVRPAV
SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIATAGRLVDDLLGRLAVDRADVVG
VGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGL
VIDGRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHGPDLTVRGMIDRAVAGDAGCARVVSD
AGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRFAVPAAVPTIVAGVLGERAEVLGALALVLREGEPIP
R

Sequences:

>Translated_401_residues
MTVDGHVAAPQGFVFMPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVDVRPAV
SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIATAGRLVDDLLGRLAVDRADVVG
VGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGL
VIDGRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHGPDLTVRGMIDRAVAGDAGCARVVSD
AGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRFAVPAAVPTIVAGVLGERAEVLGALALVLREGEPIP
R
>Mature_400_residues
TVDGHVAAPQGFVFMPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVDVRPAVS
GGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIATAGRLVDDLLGRLAVDRADVVGV
GMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLV
IDGRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHGPDLTVRGMIDRAVAGDAGCARVVSDA
GRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRFAVPAAVPTIVAGVLGERAEVLGALALVLREGEPIPR

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI190014632, Length=207, Percent_Identity=30.9178743961353, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI4885285, Length=207, Percent_Identity=30.9178743961353, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI298566325, Length=207, Percent_Identity=30.9178743961353, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI298566315, Length=207, Percent_Identity=30.9178743961353, Blast_Score=89, Evalue=9e-18,
Organism=Escherichia coli, GI1786891, Length=402, Percent_Identity=29.3532338308458, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI1787878, Length=364, Percent_Identity=26.6483516483516, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI87082127, Length=346, Percent_Identity=25.7225433526012, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87081733, Length=310, Percent_Identity=30, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1790522, Length=308, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787363, Length=199, Percent_Identity=29.1457286432161, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 41038; Mature: 40907

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVDGHVAAPQGFVFMPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPAT
CCCCCCEECCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
VSNIVGELRESGDVDVRPAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVL
HHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCEEEEECCCCCEEEHHHHHHHHHHH
AEDVVDIDVDHQAQEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCC
ILPGWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGL
CCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCE
VIDGRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHGPDLTV
EEECEEECCCCCCCCCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
RGMIDRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
VVHRFAVPAAVPTIVAGVLGERAEVLGALALVLREGEPIPR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TVDGHVAAPQGFVFMPRTPPGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPAT
CCCCCEECCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCCHHH
VSNIVGELRESGDVDVRPAVSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVL
HHHHHHHHHHCCCCEEEECCCCCCEEEEEEEECCCCEEEEECCCCCEEEHHHHHHHHHHH
AEDVVDIDVDHQAQEGIATAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSA
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCC
ILPGWVGVPAAAQMSERLGLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGL
CCCCCCCCCHHHHHHHHCCCCEEECCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCE
VIDGRVHRGGAGTAGEIGHTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHGPDLTV
EEECEEECCCCCCCCCCCCCEECCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEE
RGMIDRAVAGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQ
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
VVHRFAVPAAVPTIVAGVLGERAEVLGALALVLREGEPIPR
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]