| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316809
Identifier: 158316809
GI number: 158316809
Start: 6050538
End: 6051062
Strand: Reverse
Name: 158316809
Synonym: Franean1_5051
Alternate gene names: NA
Gene position: 6051062-6050538 (Counterclockwise)
Preceding gene: 158316810
Following gene: 158316807
Centisome position: 67.37
GC content: 68.0
Gene sequence:
>525_bases TTGCCGCAGCAGCTTGCCGCGGGTGCGCGCAAGGGCGACCTGGCCGCCCAGTACCAGGTCTCGGGCGAAGCGATCCGCAA GATCAGGCGCGGGCGCACCTGGCGGACCCTCGACGACGTCGCACGAACCCACTGCCGACGCAACCACTCGTATGCCGAGC ACGGCTACACCAGGTCGCAGGGGAAGAGGCGCTGCCGTAAGTGCCGCAGGGAGTACGAGCGCGGCTTGCGACTGACCCGC GAGGAGTACCTCGACGAGCACGCCGGGCACGAGCTGCGTACCCGTGTTAACGGGACTGTCTACTGCCTTGCCTGTTGGCG CGGAGAGAGCGACATCGACGAAGTCGCCGTCGAGCGGGCCATTGCTGGCGAGCCGCCGGAGCGCATGAGCATCGCTGAGC GACACCATGCGATCCGGCGGCTACACGGCAAGGGACCTTCGGCTCGGGAGATCGCTCGACGCCTGAGTATCAGCTCGCGC ACCGTCCAGCGACATGTGGCCCTGATCCGCGAGGCAGCGGCATGA
Upstream 100 bases:
>100_bases GCGAGGGCCGGCTGGCATCGAGGTGTGGGAGCGGTGGGCAGCGTGAGCCGTCCCGCTGCCAAGCTCACGCCTGCCCAGGT GGTGGAGATTCGGAAGCAGC
Downstream 100 bases:
>100_bases AACGCCCTATCCGCTGCGACCCACCGCCTGGCTCTTCGTCCTGTCCAAGGGTCGCGTGAACATCGAGGTCAGCCTGTGGC CCGATGGCGACGAGCGGACA
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MPQQLAAGARKGDLAAQYQVSGEAIRKIRRGRTWRTLDDVARTHCRRNHSYAEHGYTRSQGKRRCRKCRREYERGLRLTR EEYLDEHAGHELRTRVNGTVYCLACWRGESDIDEVAVERAIAGEPPERMSIAERHHAIRRLHGKGPSAREIARRLSISSR TVQRHVALIREAAA
Sequences:
>Translated_174_residues MPQQLAAGARKGDLAAQYQVSGEAIRKIRRGRTWRTLDDVARTHCRRNHSYAEHGYTRSQGKRRCRKCRREYERGLRLTR EEYLDEHAGHELRTRVNGTVYCLACWRGESDIDEVAVERAIAGEPPERMSIAERHHAIRRLHGKGPSAREIARRLSISSR TVQRHVALIREAAA >Mature_173_residues PQQLAAGARKGDLAAQYQVSGEAIRKIRRGRTWRTLDDVARTHCRRNHSYAEHGYTRSQGKRRCRKCRREYERGLRLTRE EYLDEHAGHELRTRVNGTVYCLACWRGESDIDEVAVERAIAGEPPERMSIAERHHAIRRLHGKGPSAREIARRLSISSRT VQRHVALIREAAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20046; Mature: 19915
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQQLAAGARKGDLAAQYQVSGEAIRKIRRGRTWRTLDDVARTHCRRNHSYAEHGYTRSQ CCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCHHH GKRRCRKCRREYERGLRLTREEYLDEHAGHELRTRVNGTVYCLACWRGESDIDEVAVERA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCCHHHHHHHHH IAGEPPERMSIAERHHAIRRLHGKGPSAREIARRLSISSRTVQRHVALIREAAA HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PQQLAAGARKGDLAAQYQVSGEAIRKIRRGRTWRTLDDVARTHCRRNHSYAEHGYTRSQ CCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHCCCHHH GKRRCRKCRREYERGLRLTREEYLDEHAGHELRTRVNGTVYCLACWRGESDIDEVAVERA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCEEEEEEEECCCCCHHHHHHHHH IAGEPPERMSIAERHHAIRRLHGKGPSAREIARRLSISSRTVQRHVALIREAAA HCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA