| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
Click here to switch to the map view.
The map label for this gene is 158316594
Identifier: 158316594
GI number: 158316594
Start: 5769256
End: 5769780
Strand: Reverse
Name: 158316594
Synonym: Franean1_4830
Alternate gene names: NA
Gene position: 5769780-5769256 (Counterclockwise)
Preceding gene: 158316595
Following gene: 158316593
Centisome position: 64.24
GC content: 74.86
Gene sequence:
>525_bases ATGACCGACCCGGACAGCGCCGCCTCGCCGGACGGATCGGCGCCGCAGGGATACGGCCCCGGCCGGGGCCCCGGCGCGCT CGCGCTCACCGACGGTGAGCTGAGCCGGATCCTCGCCACCCACCAGATGGGCGCGCTCGCGTCGAACAAGCGGGACGGCC ATCCGCACCTGTCGACGGTCGCCTACAGCTGGGACCCCACGGAACGCACGATCCGGATCAGCACCACCGAGGACCGGCTG AAGGTGCGCCTGCTGCGGCGTGACCCGCGCGCGGCGCTGTACGTGACCGCGCCCGACTACCTGTCGTTCGCGGTGGCCCA GGGCACGGTCGAGCTCTCCGCGGTGAGCTCGGTGCCGGGCGATCCCGCCGGGCGCGAGCTGCTCGCCCTGCAGCCACCGT TCGCCGACCCGGCGCTGGAGGCCGAGTTCCTGCGGAACATGGCGGCCGACCGCCGGCTGGTCATCCGGCTGCGCGTCGGC CGGCTGTACGGCACGGCGCTCGACAGTCCCGCGCCACCCGCCTGA
Upstream 100 bases:
>100_bases AGAGCTTCGCAATAGACATCAACGCCGCTGGCAGGGTGCTCGGCTACGCGATCGACGAGACGGGCGGCGTCCACAGCTTC GTCTGGACGGTGACCGGCGG
Downstream 100 bases:
>100_bases CCTTCACGGCCGCGCCCTCCCGCCGACCGGCCAGGCGATAAGACAGGGGAGTCACAGGGGTGACCGGGTGGGTTCCCCCG CTGGTACGTTCCGGAAATGG
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: NA
Alternate protein names: PNP/PMP oxidase; PNPOx; Pyridoxal 5'-phosphate synthase [H]
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MTDPDSAASPDGSAPQGYGPGRGPGALALTDGELSRILATHQMGALASNKRDGHPHLSTVAYSWDPTERTIRISTTEDRL KVRLLRRDPRAALYVTAPDYLSFAVAQGTVELSAVSSVPGDPAGRELLALQPPFADPALEAEFLRNMAADRRLVIRLRVG RLYGTALDSPAPPA
Sequences:
>Translated_174_residues MTDPDSAASPDGSAPQGYGPGRGPGALALTDGELSRILATHQMGALASNKRDGHPHLSTVAYSWDPTERTIRISTTEDRL KVRLLRRDPRAALYVTAPDYLSFAVAQGTVELSAVSSVPGDPAGRELLALQPPFADPALEAEFLRNMAADRRLVIRLRVG RLYGTALDSPAPPA >Mature_173_residues TDPDSAASPDGSAPQGYGPGRGPGALALTDGELSRILATHQMGALASNKRDGHPHLSTVAYSWDPTERTIRISTTEDRLK VRLLRRDPRAALYVTAPDYLSFAVAQGTVELSAVSSVPGDPAGRELLALQPPFADPALEAEFLRNMAADRRLVIRLRVGR LYGTALDSPAPPA
Specific function: Catalyzes the oxidation of either pyridoxine 5'- phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP) (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019920 - InterPro: IPR011576 - InterPro: IPR012349 - InterPro: IPR009002 [H]
Pfam domain/function: PF01243 Pyridox_oxidase [H]
EC number: =1.4.3.5 [H]
Molecular weight: Translated: 18511; Mature: 18380
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPDSAASPDGSAPQGYGPGRGPGALALTDGELSRILATHQMGALASNKRDGHPHLSTV CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEE AYSWDPTERTIRISTTEDRLKVRLLRRDPRAALYVTAPDYLSFAVAQGTVELSAVSSVPG EEEECCCCCEEEEECCHHHEEEEEEECCCCEEEEEECCHHHHHHHHCCEEEEEEECCCCC DPAGRELLALQPPFADPALEAEFLRNMAADRRLVIRLRVGRLYGTALDSPAPPA CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECHHCCCCCCCCCCCC >Mature Secondary Structure TDPDSAASPDGSAPQGYGPGRGPGALALTDGELSRILATHQMGALASNKRDGHPHLSTV CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEEE AYSWDPTERTIRISTTEDRLKVRLLRRDPRAALYVTAPDYLSFAVAQGTVELSAVSSVPG EEEECCCCCEEEEECCHHHEEEEEEECCCCEEEEEECCHHHHHHHHCCEEEEEEECCCCC DPAGRELLALQPPFADPALEAEFLRNMAADRRLVIRLRVGRLYGTALDSPAPPA CCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]