Definition Frankia sp. EAN1pec chromosome, complete genome.
Accession NC_009921
Length 8,982,042

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The map label for this gene is pdxH [C]

Identifier: 158316593

GI number: 158316593

Start: 5768731

End: 5769159

Strand: Reverse

Name: pdxH [C]

Synonym: Franean1_4829

Alternate gene names: 158316593

Gene position: 5769159-5768731 (Counterclockwise)

Preceding gene: 158316594

Following gene: 158316592

Centisome position: 64.23

GC content: 64.34

Gene sequence:

>429_bases
ATGGGTGTGACACTCGACGACAAAACACGGTCGTGGCTGGACGCGCAGAACCTCCCGGTCATCGCAACGGTGAACGACGA
CGGAAGTCCGCACTCCTCGATAATCCTGGTGAAACGGGACGAGGACGATCAGCTGTATTTCGTGACCCACGTCGGCCGGC
GCACGGAACGGAACATCTCCCGTGACCCGCGGGTCAACCTGTCGCTCTACCCCCGGGACGACCCCTACACCTCGGTGGAG
ATCCGCGGGGTGGCCGAGGTGCTCGACATCGACGGGAACAAGCTGGCCGACGAACTCACCCTGAAGTATCTCGACGAGCT
GCACGACGTCGACGACAACACCCGGGTGGCCATCCGGTTCACCCCGCAGAAGGTGATTCACTTCCCCGACCCGAAGAACC
CGCCGCCGCGCCCCCGCCCGCAGCAGTAG

Upstream 100 bases:

>100_bases
CTGACCTTCACGGCCGCGCCCTCCCGCCGACCGGCCAGGCGATAAGACAGGGGAGTCACAGGGGTGACCGGGTGGGTTCC
CCCGCTGGTACGTTCCGGAA

Downstream 100 bases:

>100_bases
GGTCGGCACCGGTAACGGGTGTGAACGGAGCGGGAACACACTTCCGGAGAATGGTCCCGAGATGACGCGCTATCTGTTCG
GGCGGTTCCTGCAGGGGGCC

Product: pyridoxamine 5'-phosphate oxidase-like protein

Products: Hydrogen peroxide; ammonia; Pyridoxal 5'-phosphate [C]

Alternate protein names: None

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVE
IRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ

Sequences:

>Translated_142_residues
MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVE
IRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ
>Mature_141_residues
GVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVEI
RGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ

Specific function: Oxidizes Pnp And Pmp Into Pyridoxal 5'-Phosphate (Plp). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.4.3.5 [C]

Molecular weight: Translated: 16266; Mature: 16135

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNIS
CCCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
RDPRVNLSLYPRDDPYTSVEIRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRF
CCCCEEEEEECCCCCCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
TPQKVIHFPDPKNPPPRPRPQQ
CCHHEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
GVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNIS
CCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC
RDPRVNLSLYPRDDPYTSVEIRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRF
CCCCEEEEEECCCCCCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
TPQKVIHFPDPKNPPPRPRPQQ
CCHHEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: FMN [C]

Metal ions: NA

Kcat value (1/min): 1.8 [C]

Specific activity: NA

Km value (mM): 0.002 {Tris,} [C]

Substrates: H2O; O2; Pyridoxamine 5'-phosphate [C]

Specific reaction: H2O + O2 + Pyridoxamine 5'-phosphate --> Hydrogen peroxide + ammonia + Pyridoxal 5'-phosphate [C]

General reaction: Redox reaction [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA