| Definition | Frankia sp. EAN1pec chromosome, complete genome. |
|---|---|
| Accession | NC_009921 |
| Length | 8,982,042 |
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The map label for this gene is pdxH [C]
Identifier: 158316593
GI number: 158316593
Start: 5768731
End: 5769159
Strand: Reverse
Name: pdxH [C]
Synonym: Franean1_4829
Alternate gene names: 158316593
Gene position: 5769159-5768731 (Counterclockwise)
Preceding gene: 158316594
Following gene: 158316592
Centisome position: 64.23
GC content: 64.34
Gene sequence:
>429_bases ATGGGTGTGACACTCGACGACAAAACACGGTCGTGGCTGGACGCGCAGAACCTCCCGGTCATCGCAACGGTGAACGACGA CGGAAGTCCGCACTCCTCGATAATCCTGGTGAAACGGGACGAGGACGATCAGCTGTATTTCGTGACCCACGTCGGCCGGC GCACGGAACGGAACATCTCCCGTGACCCGCGGGTCAACCTGTCGCTCTACCCCCGGGACGACCCCTACACCTCGGTGGAG ATCCGCGGGGTGGCCGAGGTGCTCGACATCGACGGGAACAAGCTGGCCGACGAACTCACCCTGAAGTATCTCGACGAGCT GCACGACGTCGACGACAACACCCGGGTGGCCATCCGGTTCACCCCGCAGAAGGTGATTCACTTCCCCGACCCGAAGAACC CGCCGCCGCGCCCCCGCCCGCAGCAGTAG
Upstream 100 bases:
>100_bases CTGACCTTCACGGCCGCGCCCTCCCGCCGACCGGCCAGGCGATAAGACAGGGGAGTCACAGGGGTGACCGGGTGGGTTCC CCCGCTGGTACGTTCCGGAA
Downstream 100 bases:
>100_bases GGTCGGCACCGGTAACGGGTGTGAACGGAGCGGGAACACACTTCCGGAGAATGGTCCCGAGATGACGCGCTATCTGTTCG GGCGGTTCCTGCAGGGGGCC
Product: pyridoxamine 5'-phosphate oxidase-like protein
Products: Hydrogen peroxide; ammonia; Pyridoxal 5'-phosphate [C]
Alternate protein names: None
Number of amino acids: Translated: 142; Mature: 141
Protein sequence:
>142_residues MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVE IRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ
Sequences:
>Translated_142_residues MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVE IRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ >Mature_141_residues GVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNISRDPRVNLSLYPRDDPYTSVEI RGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRFTPQKVIHFPDPKNPPPRPRPQQ
Specific function: Oxidizes Pnp And Pmp Into Pyridoxal 5'-Phosphate (Plp). [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.4.3.5 [C]
Molecular weight: Translated: 16266; Mature: 16135
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNIS CCCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC RDPRVNLSLYPRDDPYTSVEIRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRF CCCCEEEEEECCCCCCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE TPQKVIHFPDPKNPPPRPRPQQ CCHHEEECCCCCCCCCCCCCCC >Mature Secondary Structure GVTLDDKTRSWLDAQNLPVIATVNDDGSPHSSIILVKRDEDDQLYFVTHVGRRTERNIS CCEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCC RDPRVNLSLYPRDDPYTSVEIRGVAEVLDIDGNKLADELTLKYLDELHDVDDNTRVAIRF CCCCEEEEEECCCCCCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE TPQKVIHFPDPKNPPPRPRPQQ CCHHEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: FMN [C]
Metal ions: NA
Kcat value (1/min): 1.8 [C]
Specific activity: NA
Km value (mM): 0.002 {Tris,} [C]
Substrates: H2O; O2; Pyridoxamine 5'-phosphate [C]
Specific reaction: H2O + O2 + Pyridoxamine 5'-phosphate --> Hydrogen peroxide + ammonia + Pyridoxal 5'-phosphate [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA